CN186207

Overview
NameCN186207
Unique NameCN186207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.546e-58
Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = -3
Query:  351 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHIYGLESNGRLTNLI 749
            MQQIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD GRDTVEANEELGLPVDSREYGIGAQ++RDLGVRTMKLMTNNP+KYVGLKGYGLA+ GRVPL++ + KENKRYLE  R KMGH+YGL+  G +   I
Sbjct:  405 MQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHMYGLKFKGDVVEKI 537          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_SALTO (Riboflavin biosynthesis protein ribBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.655e-39
Identity = 79/122 (64.75%), Postives = 95/122 (77.87%), Query Frame = -3
Query:  384 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHIYG 749
            M+ +   GRGV++Y+RGHEGRGIGL HKLRAY LQD GRDTVEAN ELGLPVD+R+YG GAQ+L DLGVR+M+L+TNNP+K  GL+GYGL V  RV L      EN+RYL   R +MGH+ G
Sbjct:  279 MELVAKEGRGVVLYIRGHEGRGIGLLHKLRAYQLQDKGRDTVEANLELGLPVDARDYGTGAQVLYDLGVRSMRLLTNNPAKRAGLEGYGLTVTERVALPVQSHPENERYLRTKRDRMGHLLG 400          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_SALAI (Riboflavin biosynthesis protein ribBA OS=Salinispora arenicola (strain CNS-205) GN=ribBA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.121e-38
Identity = 76/120 (63.33%), Postives = 94/120 (78.33%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            + Q+   GRGV++Y+RGHEGRGIGL HKL+AY LQD GRDTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K  GL+GYGL VAGRV L      EN RYL   R +MGH+
Sbjct:  279 LDQVAREGRGVVLYVRGHEGRGIGLLHKLQAYQLQDTGRDTVDANLDLGLPADARDYGTGAQILYDLGVRSMRLLTNNPAKRAGLEGYGLTVAGRVELPVRPHPENVRYLRTKRDRMGHL 398          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_NOCFA (Riboflavin biosynthesis protein ribBA OS=Nocardia farcinica GN=ribBA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.953e-38
Identity = 74/125 (59.20%), Postives = 97/125 (77.60%), Query Frame = -3
Query:  378 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGH-IYGLE 749
            ++ ++  GRGV++Y+RGHEGRGIGL HKL+AY LQD GRDTV+AN +LGLP D+R+YG GAQ+L DLG+R+M+L+TNNP+K VGL GYGL +  RVP+      EN RYL   R +MGH + GL+
Sbjct:  281 LEMVDQEGRGVVLYMRGHEGRGIGLMHKLQAYQLQDSGRDTVDANLDLGLPADARDYGTGAQILVDLGIRSMRLLTNNPAKRVGLDGYGLTITERVPMPLRANAENLRYLRTKRDRMGHDLVGLD 405          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCPA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium paratuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.507e-37
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = -3
Query:  393 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGH 749
            M  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL   R KMGH
Sbjct:  285 MAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRTNAENIRYLMTKRDKMGH 403          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA9 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ribBA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.687e-37
Identity = 72/119 (60.50%), Postives = 92/119 (77.31%), Query Frame = -3
Query:  393 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGH 749
            M+ +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG+GAQ+L DLGV++M+L+TNNP+K VGL GYGL +  RVPL      EN RYL   R +MGH
Sbjct:  285 MEMVAKEGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGLGAQILVDLGVKSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANSENIRYLRTKRDRMGH 403          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_PROVI (Riboflavin biosynthesis protein ribBA OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ribBA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.004e-36
Identity = 80/120 (66.67%), Postives = 91/120 (75.83%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            ++ IE  GRGVLVYL   EGRGIGL +KL+AYNLQDDG DTVEANEELG   D R+YGIGAQ+L+DLGVR M+LMTNNP K VGL+GYGL +  RVPL       NK YLE  R KMGH+
Sbjct:  282 LRMIEKEGRGVLVYLM-QEGRGIGLINKLKAYNLQDDGFDTVEANEELGFKADLRDYGIGAQILQDLGVRKMRLMTNNPKKVVGLEGYGLEIVERVPLEIEPNAVNKTYLETKRDKMGHM 400          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA1 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium avium (strain 104) GN=ribBA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.311e-36
Identity = 74/119 (62.18%), Postives = 90/119 (75.63%), Query Frame = -3
Query:  393 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGH 749
            M  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LG P D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL   R KMGH
Sbjct:  285 MAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKMGH 403          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCMM (Riboflavin biosynthesis protein ribBA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ribBA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.713e-36
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = -3
Query:  393 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGH 749
            M  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL   R +MGH
Sbjct:  285 MAMVAREGRGVVLYMRGHEGRGIGLLHKLQAYQLQDAGDDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGH 403          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTU (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.237e-36
Identity = 74/119 (62.18%), Postives = 91/119 (76.47%), Query Frame = -3
Query:  393 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGH 749
            +  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL   R K+GH
Sbjct:  285 LAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
The following BLAST results are available for this feature:
BLAST of CN186207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBBA_ARATH3.546e-5881.95Riboflavin biosynthesis protein ribBA, chloroplast... [more]
RIBBA_SALTO1.655e-3964.75Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_SALAI3.121e-3863.33Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_NOCFA6.953e-3859.20Riboflavin biosynthesis protein ribBA OS=Nocardia ... [more]
RIBBA_MYCPA4.507e-3763.03Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCA97.687e-3760.50Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_PROVI1.004e-3666.67Riboflavin biosynthesis protein ribBA OS=Prostheco... [more]
RIBBA_MYCA11.311e-3662.18Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCMM1.713e-3663.03Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCTU2.237e-3662.18Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186207 ID=CN186207; Name=CN186207; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTGGAACTTAGCATGCCTATCAAAGGACCCCTTAA
ATAATTGGATTTCTTCTGCTAATTTACACCAGGGACAAAAAGAATGAATC
GCTCTTCATCAGTGCAATCAACATCAACATAGAAATTGTTTGAATTGCTG
CTTATGTATGCATACAATATTGAATTTGAATCAATAAATAAATTTTGGGT
TATGAGGTGATAATGCTTCCCTTTTTGTCATGCCAGAGTCTATCTTCAAC
TCGTACTTGAATCACGTGTCCAAACCAAGTAAATTAGTGCAGCTTACGAG
TCAGATACAGTATCAGATGAAGATTTGATACTCGGCTTACCGTTAACGTT
AATGAGATTTGTTAACCGGCCATTAGATTCTAACCCATAAATGTGACCCA
TTTTAGCACGGGGGGGCTCCAGATATCTCTTGTTTTCCTTTTTAAGGGGA
GTTATTAGGGGAACCCTTCCTGCAACTGCCAAACCATAACCCTTGAGTCC
AACATACTTCGAAGGGTTATTTGTCATCAGCTTCATTGTTCGAACACCAA
GATCCCTTAGCATCTGTGCACCAATGCCATATTCCCGTGAGTCAACAGGC
AATCCCAATTCCTCATTTGCTTCAACTGTATCACGCCCATCGTCCTGCAA
GTTATAAGCGCGAAGCTTGTGGCCTAAACCAATGCCCCTTCCCTCATGAC
CACGGAGATAAACTAATACACCCCTGCCAGCAGCCTCAATCTGCTGCATT
G
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