CN186179

Overview
NameCN186179
Unique NameCN186179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186179_ssr441 microsatellite CN186179_ssr441:441..450. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186179 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.510e-19
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = -3 
Query:  465 TQKVITARDIWTGCLLFGALMDDVGIDLPRAPHNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSP-GQNILDSQASDIEACQSL 761
            T+K     D+  GCLL+G+L++D+GIDLP+AP  FGE++ +LIL+ GL F+  + ILK ME+  +RK++  +  + +   P GQ IL S A+ ++AC SL
Sbjct:  687 TKKTFKTEDLENGCLLYGSLLEDIGIDLPKAPTQFGEVVARLILSCGLRFEAAEGILKAMEDTFFRKAIFTSVTKTLGADPAGQAILSSHAAVVDACNSL 786
The following BLAST results are available for this feature:
BLAST of CN186179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IF41_WHEAT1.510e-1944.00Eukaryotic initiation factor iso-4F subunit p82-34... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186179 ID=CN186179; Name=CN186179; organism=Citrus sinensis; type=EST; length=766bp
CTTTCAGTATGTAACATGGAAGGGCAAACTACTTTTACGATTTATGAAGT
GCCATTTTGAACAATAAACTAAATTACTTCAGTCAAGAAACTAACCTTTA
ATTAAAAACAAAATAACAAAAGGAAAAAAACTACTCAAATACAAAAACAG
TATCTGGATCCCTTAAAAGGGGCCGGTCTTCTCAATCAATTTGGCAACAT
GATTAGCTGCACTCAGGAACAAAATCCATGGCATTTATAGTTCTGATTTC
TTTCCTCAATAAACACAAAGCTCTGACCTCCAAAAAGATATACAACTCAA
TAAAATTTACCTATTTTTTTCAGTTTTCTTTTTGACCGCTCCACCTTATC
ACATGATACATGTTGCTTGCCTCAGTCAGTTATGAAGACCTGGAAGCAAG
CACGGGAAATCTACGTGGACACTCGCGCTCATGCAAAGAGATATATATAT
TAGGTGTGCTACAGCAGACTCTGGCAGGCCTCAATATCAGATGCCTGTGA
ATCCAATATGTTTTGCCCAGGACTACAGCTTATTATCCTCAATGCTGCAT
CAAGTACAGATTTCCGATACATCTCCTCTTCCATCTTCTTGAGGATCTCC
TGCACCACTTTAAAATCCAATCCCCCGGCCAGAATTAGTTTCCCAATAAT
CTCACCAAAATTATGCGGTGCTCTTGGTAAATCAATTCCAACATCATCCA
TCAAAGCACCAAAGAGCAAACATCCCGTCCAAATGTCTCTAGCAGTAATG
ACTTTCTGTGTCAACA
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