CN186170

Overview
NameCN186170
Unique NameCN186170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186170_ssr17 microsatellite CN186170_ssr17:17..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN186170 vs. ExPASy Swiss-Prot
Match: LANC2_MOUSE (LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.399e-20
Identity = 63/184 (34.24%), Postives = 95/184 (51.63%), Query Frame = 1
Query:  274 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD-STRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLE-----IAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVL---XXXXXXXXXXXXCPLMYRWHGTRYWGAANGLAG 798
            D + YTG  G A + L+ Y +TG+Q  LL S   +D     +R+ S R VTFLCG  G  A+GAV+ +++         +   L+     + QE  LP            +LLYGRAG+L+A L++N  +G GT+    +  +V A++               CPL+Y+WH  +Y GAA+G+AG
Sbjct:   99 DCSAYTGWTGIALLYLQLYRVTGDQTYLLRS---LDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPD-----------ELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQYVGAAHGMAG 268          
BLAST of CN186170 vs. ExPASy Swiss-Prot
Match: LANC2_HUMAN (LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 61/184 (33.15%), Postives = 95/184 (51.63%), Query Frame = 1
Query:  274 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD-STRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLE-----IAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVL---XXXXXXXXXXXXCPLMYRWHGTRYWGAANGLAG 798
            D + YTG  G A + L+ Y +T +Q  LL S   +D     +R+ + R VTFLCG  G  A+GAV+ +++         +   L+     + QE  LP            +LLYGRAG+L+A L++N  +G GT+    +  +V+A++               CPL+Y+WH  +Y GAA+G+AG
Sbjct:   99 DCSAYTGWTGIALLYLQLYRVTCDQTYLLRS---LDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQLQRSVVCQESDLPD-----------ELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSREERKTERCPLLYQWHRKQYVGAAHGMAG 268          
BLAST of CN186170 vs. ExPASy Swiss-Prot
Match: LANC1_HUMAN (LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 54/178 (30.34%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  274 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVL---XXXXXXXXXXXXCPLMYRWHGTRYWGAANGLAG 798
            D T YTG  G A + L  Y++ G+   L L+   +    + +  + R +TFLCG  G  A+ AV+ ++M +  + +  +   + +   +  P  P E        +LYGR G+++A LFVNK+ G   +P   +  I + +L                PLMY W+   Y GAA+GLAG
Sbjct:   58 DGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCL--TKRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHL--NKIDPHAPNE--------MLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAG 223          
BLAST of CN186170 vs. ExPASy Swiss-Prot
Match: LANC1_DANRE (LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 58/178 (32.58%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  274 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVL---XXXXXXXXXXXXCPLMYRWHGTRYWGAANGLAG 798
            D T YTG  G A + L  + + G+   L  + + ++   S+   + R VTFLCG  G  AI AVV +R+      D  LN  L+      L     +G   +  +LLYGR G+L++ +FVN+      +P + +  I DA+L                PLMY W+   Y GAA+GL+G
Sbjct:   60 DCTGYTGWAGIALLYLHLHSVFGDPTFLQRALDYVNR--SLRSLTQRWVTFLCGDAGPLAIAAVVYHRLQKHQESDECLNRLLQ------LQPSVVQGKGRLPDELLYGRTGYLYSLIFVNQQFQQEKIPFQYIQQICDAILESGQILSQRNKIQDQSPLMYEWYQEEYVGAAHGLSG 229          
BLAST of CN186170 vs. ExPASy Swiss-Prot
Match: LANC1_MOUSE (LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 53/178 (29.78%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  274 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLXXXXXXXXXXXXC---PLMYRWHGTRYWGAANGLAG 798
            D T YTG  G A + L  + + G+   L ++   +    + +  S R +TFLCG  G  A+ AV+ ++M    + +  +   + +   +  P  P E        +LYGR G+++A LFVNK+ G   +P   +  I + +L                PLMY W+   Y GAA+GLAG
Sbjct:   58 DGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCL--SRRSITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHL--NKIDPHVPNE--------MLYGRIGYIFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAAHGLAG 223          
BLAST of CN186170 vs. ExPASy Swiss-Prot
Match: LANC1_RAT (LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 53/178 (29.78%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  274 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVL---XXXXXXXXXXXXCPLMYRWHGTRYWGAANGLAG 798
            D T YTG  G A + L  + + G+   L ++   +    + +  S R +TFLCG  G  A+ AV+ ++M    + +  +   + +   +  P  P E        +LYGR G+++A LFVNK+ G   +P   +  I + +L                PLMY W+   Y GAA+GLAG
Sbjct:   58 DGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKHSLNCL--SRRSITFLCGDAGPLAVAAVLYHKMNSGKQAEDCITRLIHL--NKIDPHVPNE--------MLYGRIGYIFALLFVNKNFGEEKIPQSHIQQICETILTSGEKLSRKRNFTTKSPLMYEWYQEYYVGAAHGLAG 223          
The following BLAST results are available for this feature:
BLAST of CN186170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LANC2_MOUSE3.399e-2034.24LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1... [more]
LANC2_HUMAN1.865e-1833.15LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1... [more]
LANC1_HUMAN2.520e-1530.34LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1... [more]
LANC1_DANRE4.299e-1532.58LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 ... [more]
LANC1_MOUSE4.753e-1429.78LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1... [more]
LANC1_RAT8.108e-1429.78LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186170 ID=CN186170; Name=CN186170; organism=Citrus sinensis; type=EST; length=816bp
TTTATTTAGAAAAAAAAATAATAATAATAATACATAAACTACATGTCCTC
TTTAAAGTTTGCTTCTCAGGACAGCCATGCCCATGAAGACAATAACAACG
GCGAACGCCACGATTTGCTTCATCACGACAGCATCGTCGATCCAACGGCC
GCCATTAACATGTCCCTTCCATGTGAAACTTTTCTGAAAGCTGCCGTGTC
TCTTAAAGACCAGGTGGTGGAGGTGACCTGGCGGAGAGGTTCTGGTGGTG
GGGGCGAACCGGGTAGGGGGATGGACCCGACTCTTTATACGGGTCTGTTG
GGCACAGCTTTCATCTGCTTGAGGTCGTACGAGTTAACTGGTAACCAGCA
GGAACTGCTATTGTCCGCAGAGATTATTGACACGTGTGCTTCTGTCGTGC
GTGACTCCACCAGGCACGTGACATTTTTATGTGGTAGAGGAGGGATTTAC
GCAATAGGTGCCGTGGTGGCTAACCGCATGGGAGACCGTTCAAGGCGAGA
TTTCTTCTTGAATCTCTTTCTTGAGATAGCACAAGAGAGAGCCCTCCCAG
CTGGACCAGAAGAAGGCGGATTCGGAATGTCTTATGATCTCCTTTATGGT
CGAGCTGGATTTTTATGGGCTGCTTTGTTCGTAAACAAGCATCTCGGGGC
AGGGACATTGCCTAATGAGCTTCTCATGCCTATTGTTGATGCTGTTTTAG
CTGGGGGCAGAGCAGGTGCAACTGCTAACACAGCGTGCCCCTTGATGTAC
AGATGGCATGGCACAAGGTACTGGGGGGCAGCCAATGGTCTTGCTGGAAA
TTTTGCAAGTGCTACT
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