CX674897

Overview
NameCX674897
Unique NameCX674897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5456 contig Csv1_Contig5456:144..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.744e-68
Identity = 123/150 (82.00%), Postives = 139/150 (92.67%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            IFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT++LVK+T +MKSFKA+DK+R+ER N+RH GAR
Sbjct:   44 IFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.153e-66
Identity = 123/150 (82.00%), Postives = 136/150 (90.67%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            IFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI   K  ++LVK+T D+K+FKAYDK+R+ER N RH GAR
Sbjct:   44 IFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.967e-66
Identity = 123/150 (82.00%), Postives = 135/150 (90.00%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  ++LVK+T +MKS  AYDK+R+ER N+RH GAR
Sbjct:   44 IFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.473e-66
Identity = 122/150 (81.33%), Postives = 135/150 (90.00%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   +LVK+T +MKS KA+DK+R+ER N+RH GAR
Sbjct:   44 IFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.235e-60
Identity = 114/150 (76.00%), Postives = 128/150 (85.33%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            IFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT++LVK+T DMK F AYDK+R+E  N+RH G R
Sbjct:   44 IFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.555e-53
Identity = 104/151 (68.87%), Postives = 121/151 (80.13%), Query Frame = -1
Query:  231 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARL 683
            I PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH GAR+
Sbjct:   40 ISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARM 190          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.568e-45
Identity = 89/149 (59.73%), Postives = 111/149 (74.50%), Query Frame = -1
Query:  234 FPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 680
            FPRP AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP ++LVK+T DMK    Y KLRIER N R  G R
Sbjct:   46 FPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMR 194          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 3.055e-43
Identity = 90/150 (60.00%), Postives = 110/150 (73.33%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI           +++D K+FKA+  LR+ RAN R FG R
Sbjct:   46 IAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.419e-40
Identity = 84/150 (56.00%), Postives = 106/150 (70.67%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            I PRP AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI +         +T++ K F A+  LR+ RAN R FG R
Sbjct:   46 IAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIR 195          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.129e-40
Identity = 83/150 (55.33%), Postives = 109/150 (72.67%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI           ++++ K+FKA+  LR+ RAN R FG R
Sbjct:   46 IAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195          
The following BLAST results are available for this feature:
BLAST of CX674897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH2.744e-6882.0060S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL133_ARATH1.153e-6682.0060S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_BRANA1.967e-6682.0060S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA7.473e-6681.3360S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL132_ARATH1.235e-6076.00Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC5.555e-5368.8760S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW5.568e-4559.7360S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE3.055e-4360.0060S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_ICTPU1.419e-4056.0060S ribosomal protein L13 OS=Ictalurus punctatus G... [more]
RL13_CHICK4.129e-4055.3360S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9D04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9D04-G7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674897 ID=CX674897; Name=CX674897; organism=Citrus sinensis; type=EST; length=728bp
TTTTTTTAAAAACAAGACAACCATAGGGTAGGTCCATTGCAAATAATATA
ACCAAGAAATCTTCCCACATTCAAAATGAAATAACTTCTTCAAACCTAAA
GCTAAGAGATTGAAATCACTATAACAAAAAGATTCAAAATTGAAATGTAA
AATGTAGTGCCACACTCAATGTGCTGCTTAAACAAGTTTGTTTACTTCTT
CTCTTCCTTTTCAGCCTCTGCAGCCTTCTTCAACCTGGCACCAAAATGGC
GCTCGTTCGCACGCTCAATCCGGAGCTTGTCATAAGCCTTGAAGGACTTC
ATATCTTGAGTAACCTTAACAAGGTCGACAGTAGGCTTCTCAAGAGTAAT
GGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTCAGGAG
CAGAATCACCAGCCTTAAACTTGCGAGCACGTCTTGGGAAAACAACCAAC
TTGGCCTTGTAAGTCTTCAGCCTCTGAACATTAGATTGAAGACCCTCAAG
AGAACGGTTCTTGCGTCGATGATCGACTGAAACGCCAATTGTTGGAGCCA
GTTTCTTGGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGTAAAGCCTCTG
CCAGCCCTTAATTTCATGTTATATTTCAAAGTCTGGCCATGAACGACGGG
GCGAAGAGGACCAGCAGTAGGGCGAGGGAAGATTTTAACGGCCTTCTTTT
GACGAGCAACTCGTCGTCGATTTTTGCG
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