CN186158

Overview
NameCN186158
Unique NameCN186158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 6.510e-60
Identity = 112/138 (81.16%), Postives = 122/138 (88.41%), Query Frame = -3
Query:  338 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGK 751
            MQQIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD GRDTVEANEELGLPVDSREYGIGAQ++RDLGVRTMKLMTNNP+KYVGLKGYGLA+ GRVPL++ I KENKRYLETKR KMGH+YGL+  G +   I    +
Sbjct:  405 MQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHMYGLKFKGDVVEKIESESE 542          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_SALTO (Riboflavin biosynthesis protein ribBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.768e-41
Identity = 81/122 (66.39%), Postives = 97/122 (79.51%), Query Frame = -3
Query:  386 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 751
            M+ +   GRGV++Y+RGHEGRGIGL HKLRAY LQD GRDTVEAN ELGLPVD+R+YG GAQ+L DLGVR+M+L+TNNP+K  GL+GYGL V  RV L      EN+RYL TKR +MGH+ G
Sbjct:  279 MELVAKEGRGVVLYIRGHEGRGIGLLHKLRAYQLQDKGRDTVEANLELGLPVDARDYGTGAQVLYDLGVRSMRLLTNNPAKRAGLEGYGLTVTERVALPVQSHPENERYLRTKRDRMGHLLG 400          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_SALAI (Riboflavin biosynthesis protein ribBA OS=Salinispora arenicola (strain CNS-205) GN=ribBA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.276e-39
Identity = 78/120 (65.00%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  392 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 751
            + Q+   GRGV++Y+RGHEGRGIGL HKL+AY LQD GRDTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K  GL+GYGL VAGRV L      EN RYL TKR +MGH+
Sbjct:  279 LDQVAREGRGVVLYVRGHEGRGIGLLHKLQAYQLQDTGRDTVDANLDLGLPADARDYGTGAQILYDLGVRSMRLLTNNPAKRAGLEGYGLTVAGRVELPVRPHPENVRYLRTKRDRMGHL 398          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_NOCFA (Riboflavin biosynthesis protein ribBA OS=Nocardia farcinica GN=ribBA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.844e-39
Identity = 76/125 (60.80%), Postives = 99/125 (79.20%), Query Frame = -3
Query:  380 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 751
            ++ ++  GRGV++Y+RGHEGRGIGL HKL+AY LQD GRDTV+AN +LGLP D+R+YG GAQ+L DLG+R+M+L+TNNP+K VGL GYGL +  RVP+      EN RYL TKR +MGH + GL+
Sbjct:  281 LEMVDQEGRGVVLYMRGHEGRGIGLMHKLQAYQLQDSGRDTVDANLDLGLPADARDYGTGAQILVDLGIRSMRLLTNNPAKRVGLDGYGLTITERVPMPLRANAENLRYLRTKRDRMGHDLVGLD 405          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCPA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium paratuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.843e-38
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            M  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR KMGH
Sbjct:  285 MAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRTNAENIRYLMTKRDKMGH 403          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA9 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ribBA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.144e-38
Identity = 74/119 (62.18%), Postives = 94/119 (78.99%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            M+ +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG+GAQ+L DLGV++M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH
Sbjct:  285 MEMVAKEGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGLGAQILVDLGVKSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANSENIRYLRTKRDRMGH 403          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_PROVI (Riboflavin biosynthesis protein ribBA OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ribBA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.106e-38
Identity = 82/120 (68.33%), Postives = 93/120 (77.50%), Query Frame = -3
Query:  392 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 751
            ++ IE  GRGVLVYL   EGRGIGL +KL+AYNLQDDG DTVEANEELG   D R+YGIGAQ+L+DLGVR M+LMTNNP K VGL+GYGL +  RVPL       NK YLETKR KMGH+
Sbjct:  282 LRMIEKEGRGVLVYLM-QEGRGIGLINKLKAYNLQDDGFDTVEANEELGFKADLRDYGIGAQILQDLGVRKMRLMTNNPKKVVGLEGYGLEIVERVPLEIEPNAVNKTYLETKRDKMGHM 400          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA1 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium avium (strain 104) GN=ribBA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            M  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LG P D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR KMGH
Sbjct:  285 MAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKMGH 403          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCMM (Riboflavin biosynthesis protein ribBA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ribBA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.004e-38
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            M  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH
Sbjct:  285 MAMVAREGRGVVLYMRGHEGRGIGLLHKLQAYQLQDAGDDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGH 403          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTU (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.148e-38
Identity = 76/119 (63.87%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            +  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  285 LAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
The following BLAST results are available for this feature:
BLAST of CN186158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBBA_ARATH6.510e-6081.16Riboflavin biosynthesis protein ribBA, chloroplast... [more]
RIBBA_SALTO6.768e-4166.39Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_SALAI1.276e-3965.00Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_NOCFA2.844e-3960.80Riboflavin biosynthesis protein ribBA OS=Nocardia ... [more]
RIBBA_MYCPA1.843e-3864.71Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCA93.144e-3862.18Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_PROVI4.106e-3868.33Riboflavin biosynthesis protein ribBA OS=Prostheco... [more]
RIBBA_MYCA15.363e-3863.87Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCMM7.004e-3864.71Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCTU9.148e-3863.87Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186158 ID=CN186158; Name=CN186158; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTTTTTGGAACTTAGCATGCCTATCAAAGGACCACTCTT
AATAATTGGATTTCTTCTGCTAATTTACACCAGGGCATATTAATAATGAA
TCGCTCTTCATCAGTGCAATCAACATCAACATAGAAATTGTTTGAATTGC
TGCTTATGTATGCATACAATATTGAATTTGAATCAATAAATAAATTTTGT
ATTCTGAGGTGATAATGCTTCCCTTTTTGTCATGCCAGAGTCTATCTTCA
ACTCGTACTTGAATCACGTGTCCAAACCAAGTAAATTAGTGCAGCTTACG
AGTCAGATACAGTATCAGATGAAGATTTGATACTCGGCTTACCGTTACCG
TTAATGAGATTTGTTAACCGGCCATTAGATTCTAACCCATAAATGTGACC
CATTTTAGCACGTTTAGTCTCCAGATATCTCTTGTTTTCCTTTTTAATGG
GAGTTATTAGGGGAACCCTTCCTGCAACAGCCAAACCATAACCCTTGAGT
CCAACATACTTCGAAGGGTTGTTTGTCATCAGCTTCATTGTTCGAACACC
AAGATCCCTTAGCATCTGTGCACCAATGCCATATTCCCGTGAGTCAACAG
GCAATCCCAATTCCTCATTTGCTTCAACTGTATCACGCCCATCGTCCTGC
AAGTTATAAGCGCGAAGCTTGTGGCCTAAACCAATGCCCCTTCCCTCATG
ACCACGGAGATAAACTAATACACCCCTGCCAGCAGCCTCAATCTGCTGCA
TTG
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