CN186157

Overview
NameCN186157
Unique NameCN186157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN186157 vs. ExPASy Swiss-Prot
Match: PLDP1_ARATH (Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.234e-45
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = -2 
Query:  143 ATARMNTTIYQDVFSCVPNDLIHTRAAIRQNIAFWKEKLGHTTIDLGIAPRNLESYQNGDIQKTDPLERLQAVRGHLVSFPLDFMCKEDLRPVFNESEYYAA-QVFY 460
            ATA+ NT IYQDVFSCVPNDLIH+R A RQ++++WKEKLGHTTIDLGIAP  LESY NGDI+++DP++RL+A++GHLVSFPLDFMCKEDLRPVFNESEYYA+ QVF+
Sbjct:  990 ATAKTNTMIYQDVFSCVPNDLIHSRMAFRQSLSYWKEKLGHTTIDLGIAPEKLESYHNGDIKRSDPMDRLKAIKGHLVSFPLDFMCKEDLRPVFNESEYYASPQVFH 1096
[Close]
BLAST of CN186157 vs. ExPASy Swiss-Prot
Match: PLDP2_ARATH (Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP2 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 7.520e-27
Identity = 65/108 (60.19%), Postives = 78/108 (72.22%), Query Frame = -2 
Query:  143 ATARMNTTIYQDVFSCVPNDLIHTRAAIRQNIAFWKEKLGHTTIDLGIAPRNLESYQNGDIQKTDPLERLQAVRGHLVSFPLDFMC-KEDLRPVFNESEYYAA-QVFY 460
            ATA+ NT IY  VFSC+PN+ I +RAA+R N+A  K+KLGHTTIDLGIAP  LES        +D  E L+  RG+LV FPL FMC +EDLRP FNESE+Y A QVF+
Sbjct:  945 ATAKKNTDIYNQVFSCIPNEHIRSRAALRHNMALCKDKLGHTTIDLGIAPERLESC------GSDSWEILKETRGNLVCFPLQFMCDQEDLRPGFNESEFYTAPQVFH 1046
The following BLAST results are available for this feature:
BLAST of CN186157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PLDP1_ARATH1.234e-4577.57Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP... [more]
PLDP2_ARATH7.520e-2760.19Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186157 ID=CN186157; Name=CN186157; organism=Citrus sinensis; type=EST; length=464bp
TCTCAAGGGGAAAGCCCTTAAAGGATATGCCCCTCTCTGCGTCTATTTCT
CTGTACGTGTGGTTTCTGTGCATTTTGCCTTTTTAAAAAAAAAGGGGATT
TTCCGCAAATTGGAAATCAACCCTGCGCTTTCTCTAAGCTCAATAAAAAA
CTTGAGCTGCGTAATACTCACTCTCATTAAAAACGGGTCTTAAATCTTCT
TTGCACATAAAATCCAAAGGAAAAGAAACAAGATGTCCACGCACTGCCTG
TAATCTCTCCAAGGGATCGGTCTTTTGGATATCTCCATTTTGATAAGATT
CTAGATTCCGAGGAGCTATTCCTAAGTCTATAGTAGTATGGCCAAGTTTC
TCCTTCCAAAAAGCAATGTTTTGTCTAATTGCAGCTCTAGTGTGAATAAG
ATCATTGGGAACACAAGAAAAGACATCCTGGTAGATGGTGGTATTCATCC
TTGCTGTTGCACCT
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