CV998089

Overview
NameCV998089
Unique NameCV998089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: CP21C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 5.612e-39
Identity = 81/148 (54.73%), Postives = 106/148 (71.62%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSKG-FELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 497
            L+T KG + +ELFKD +P  VD+F+  CQ GYFKG  F  V+K++VIQAG S +  A  +W      R  + TS KHE FM+GT K+K+ +G FE +I +A I DLN+KL VFGRV KG+DVVQEIEEV+TD+ YQPKS + I++VTL
Sbjct:   82 LDTGKGSVTIELFKDTAPNVVDQFMKFCQDGYFKGFLFSRVVKHFVIQAGDSAEFDAVKDWALD---RKNIDTSLKHEEFMVGTPKAKNEQGGFEFFIVSAQIKDLNEKLTVFGRVSKGQDVVQEIEEVETDDQYQPKSPIEIMSVTL 226          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17
Identity = 48/147 (32.65%), Postives = 81/147 (55.10%), Query Frame = 3
Query:   63 TSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV--KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 497
            T+ G I VELF D  P+T   FI+L + GY+  + FH  IK ++IQ G         E   +     +++T+ KH+A  + ++  + KD+ G + +IT A  P L+    VFG+VV G DV+ ++E +  DE  +P+ ++ I  + +
Sbjct:  292 TNYGNINVELFSDKKPKTCHNFIELAKTGYYNDVIFHRNIKKFMIQGGDPTGTGKGGESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLESIPVDEKDRPEREIKIKQIQM 438          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.030e-16
Identity = 50/151 (33.11%), Postives = 83/151 (54.97%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 500
            ++TS G I ++LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  494 IHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 644          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.294e-16
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 500
            ++TS G I  +LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  496 IHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 646          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.294e-16
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 500
            ++TS G I  +LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  496 IHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 646          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.913e-16
Identity = 50/151 (33.11%), Postives = 83/151 (54.97%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 500
            ++TS G I ++LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  496 VHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNVKVNPQTDKPYEDVSIINITVK 646          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.675e-16
Identity = 51/152 (33.55%), Postives = 82/152 (53.95%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC-----------QKGYFKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 488
            G I++EL+ D +P T + F+ LC           +  ++KG +FH VIKN++IQ G  +K      E    G    +       E F++    K  ++ G + +ITT P P LN+  +VFG+VV G++VV +IE + T+   +P +DV I+N
Sbjct:   21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILN 172          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.651e-15
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 3
Query:   60 NTSKGYIIVELFKDGSPETVDKFIDLC--QKG--------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKS 470
            NT  G ++ EL+ D  P+T + F  LC  +KG        ++KG SFH VIKN+++Q G           +  G+  +      KH+   +    + K++ G + +ITTA  P LN    VFG VV+G D+V+++E  +TD   +PK+
Sbjct:   17 NTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHKIGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKA 164          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: CYP10_CAEEL (Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorhabditis elegans GN=cyn-10 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.259e-14
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 497
            L+T+ G I +EL+ D +P+  + F+ LC   Y+ G  FH  IK++++Q G         E    G    +  ++ KH++    ++ +   DS   + +IT A    L+ K  +FG+V+ G D ++EIE +  D  Y+P     I NVT+
Sbjct:    5 LHTTSGDIKIELYVDDAPKACENFLALCASDYYNGCIFHRNIKDFMVQTGDPTHSGKGGESIWGGPFEDEFVSALKHDSRGCVSMANNGPDSNRSQFFITYAKQAHLDMKYTLFGKVIDGFDTLEEIETIKVDNKYRPLVQQKIQNVTI 153          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIL1_EMENI (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Emericella nidulans GN=cyp1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.147e-14
Identity = 44/151 (29.14%), Postives = 75/151 (49.67%), Query Frame = 3
Query:   60 NTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLKHA 506
            +TS G   VEL+   +P+T   F  L Q+GY+  + FH +I N+++Q G               K   ++R+  KH    I ++ +   ++ G + +IT AP P L+ K  +FGRV  G  ++Q +  V T+   +P  +V I+   +  A
Sbjct:    8 DTSMGSFTVELYNSHAPKTCKNFATLAQRGYYNNVIFHRIIPNFMVQTGDPTGTGRGGSSIYGEKFEDEIRSDLKHTGAGILSMANSGPNTNGSQFFITLAPTPWLDGKHTIFGRVKSGMRIIQRMGLVKTNNEDRPLDEVKILRAKVVEA 158          
The following BLAST results are available for this feature:
BLAST of CV998089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CP21C_ARATH5.612e-3954.73Peptidyl-prolyl cis-trans isomerase CYP21-3, mitoc... [more]
PPIL2_RHIOR7.885e-1732.65Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]
PPWD1_BOVIN1.030e-1633.11Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_PONAB2.294e-1633.11Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN2.294e-1633.11Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_MOUSE3.913e-1633.11Peptidylprolyl isomerase domain and WD repeat-cont... [more]
CYP1_BRUMA6.675e-1633.55Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPID_DICDI5.651e-1533.11Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
CYP10_CAEEL1.259e-1430.20Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorha... [more]
PPIL1_EMENI2.147e-1429.14Peptidyl-prolyl cis-trans isomerase-like 1 OS=Emer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_D-5_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC47_G06_036, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998089 ID=CV998089; Name=CV998089; organism=Citrus sinensis; type=EST; length=822bp
GATCAAGGATGATGCCTATGCGGTTTCAAGAAGTTTGATCTTCCTGGCCA
TGCTGTTTAAATACATCTAAAGGTTATATAATAGTGGAACTCTTCAAAGA
TGGTTCACCAGAAACCGTGGATAAATTTATTGACTTGTGTCAAAAGGGGT
ACTTCAAAGGTATGTCTTTCCATCATGTGATCAAAAACTATGTCATTCAA
GCTGGGCATTCCAAGGATCTTGCAGCTGCTGATGAATGGACATCAAGAGG
GAAGATCCGCAGTCAGCTGAGGACCAGTCCGAAGCATGAGGCGTTTATGA
TTGGAACTGTAAAATCTAAAGACAGCAAAGGATTTGAGCTATACATTACA
ACTGCACCAATACCAGATTTAAATGATAAGCTTATTGTGTTTGGACGAGT
AGTGAAGGGTGAGGATGTGGTGCAGGAAATTGAAGAGGTGGATACAGATG
AGCACTATCAGCCTAAGTCAGATGTAGGGATCATCAATGTGACACTAAAG
CATGCAATATGAGGATGTATGCTAAGCTACCGAAAAGATTTTACACCTAG
CCAAGTTTCTTGTTGTGCTATTGATTTTCGTATTAATCTTGTATTGCTGC
TGCTAGAACGCTTGGTTCAGGTTTTCTTTCTTGTCTCTCCCCGTTTATTG
TACTGCAGGGAGAGAAGGGTTCAAAGAAATGTTGTTGCATTGTTCAAAAA
AGTAAAGGTTTGTACTTCTTAGTAGGCAAAATACACAATTTTGTCAATTT
CATATTGAAATTTTTCTTGTAAAATTTCATGAGAAAATGTTTTTAACTTA
TTGCGGCCTTTTAAAGGTGAAA
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