EL492530

Overview
NameEL492530
Unique NameEL492530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length251
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: ATHB8_ARATH (Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.883e-33
Identity = 66/77 (85.71%), Postives = 74/77 (96.10%), Query Frame = 2
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGFTQ 244
            SI+HIVDH DLEPWSVPEVLR LYESSTL+AQ+TTMAALR+LRQISQE+SQP+VTGWGRRPAALRALSQRLS+GF +
Sbjct:  325 SILHIVDHFDLEPWSVPEVLRSLYESSTLLAQRTTMAALRYLRQISQEISQPNVTGWGRRPAALRALSQRLSKGFNE 401          
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: HOX29_ORYSJ (Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. japonica GN=HOX29 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.667e-28
Identity = 55/77 (71.43%), Postives = 70/77 (90.91%), Query Frame = 2
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGFTQ 244
            S+IHIVDHMDLEPWSVPEV+RPLYESS ++AQK +MAALR+LRQ++ E ++  +TGWGR+PAALRALSQ+L+RGF +
Sbjct:  344 SVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKISMAALRYLRQVAHEDTRSVITGWGRQPAALRALSQKLTRGFNE 420          
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: HOX29_ORYSI (Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. indica GN=HOX29 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.667e-28
Identity = 55/77 (71.43%), Postives = 70/77 (90.91%), Query Frame = 2
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGFTQ 244
            S+IHIVDHMDLEPWSVPEV+RPLYESS ++AQK +MAALR+LRQ++ E ++  +TGWGR+PAALRALSQ+L+RGF +
Sbjct:  337 SVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKISMAALRYLRQVAHEDTRSVITGWGRQPAALRALSQKLTRGFNE 413          
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: ATB15_ARATH (Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.940e-27
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 2
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQ--PSVTGWGRRPAALRALSQRLSRGFTQ 244
            SIIHIVDHMDLE  SVPEVLRPLYES  ++AQKTTMAALR L+QI+QEV+Q   SV GWGRRPAALRALSQRLSRGF +
Sbjct:  326 SIIHIVDHMDLEACSVPEVLRPLYESPKVLAQKTTMAALRQLKQIAQEVTQTNSSVNGWGRRPAALRALSQRLSRGFNE 404          
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: HOX9_ORYSJ (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. japonica GN=HOX9 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.424e-24
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 2
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            SI+HIVDH+DLE WSVPEVLRPLYESS ++AQK T AALRH+RQI+QE S   V   GR+PA LR  SQRLSRGF
Sbjct:  332 SIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGF 406          
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: HOX9_ORYSI (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. indica GN=HOX9 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.424e-24
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 2
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            SI+HIVDH+DLE WSVPEVLRPLYESS ++AQK T AALRH+RQI+QE S   V   GR+PA LR  SQRLSRGF
Sbjct:  332 SIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGF 406          
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: HOX10_ORYSJ (Homeobox-leucine zipper protein HOX10 OS=Oryza sativa subsp. japonica GN=HOX10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.424e-24
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 2
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            SI+HIVDH+DLE WSVPEVLRPLYESS ++AQK T AALRH+RQI+QE S   V   GR+PA LR  SQRLSRGF
Sbjct:  330 SIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGF 404          
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: HOX10_ORYSI (Homeobox-leucine zipper protein HOX10 OS=Oryza sativa subsp. indica GN=HOX10 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.424e-24
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 2
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            SI+HIVDH+DLE WSVPEVLRPLYESS ++AQK T AALRH+RQI+QE S   V   GR+PA LR  SQRLSRGF
Sbjct:  330 SIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGF 404          
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: ATB14_ARATH (Homeobox-leucine zipper protein ATHB-14 OS=Arabidopsis thaliana GN=ATHB-14 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.458e-23
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 2
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            SI+HIVDH+DL+ WSVPEV+RPLYESS ++AQK T+AALRH+RQI+QE S     G GR+PA LR  SQRL RGF
Sbjct:  339 SILHIVDHVDLDAWSVPEVMRPLYESSKILAQKMTVAALRHVRQIAQETSGEVQYGGGRQPAVLRTFSQRLCRGF 413          
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: REV_ARATH (Homeobox-leucine zipper protein REVOLUTA OS=Arabidopsis thaliana GN=REV PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.879e-22
Identity = 50/75 (66.67%), Postives = 63/75 (84.00%), Query Frame = 2
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            SIIHIVDH++LE WSVP+VLRPLYESS ++AQK T++ALR++RQ++QE +   V G GR+PA LR  SQRLSRGF
Sbjct:  326 SIIHIVDHLNLEAWSVPDVLRPLYESSKVVAQKMTISALRYIRQLAQESNGEVVYGLGRQPAVLRTFSQRLSRGF 400          
The following BLAST results are available for this feature:
BLAST of EL492530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ATHB8_ARATH6.883e-3385.71Homeobox-leucine zipper protein ATHB-8 OS=Arabidop... [more]
HOX29_ORYSJ6.667e-2871.43Homeobox-leucine zipper protein HOX29 OS=Oryza sat... [more]
HOX29_ORYSI6.667e-2871.43Homeobox-leucine zipper protein HOX29 OS=Oryza sat... [more]
ATB15_ARATH1.940e-2779.75Homeobox-leucine zipper protein ATHB-15 OS=Arabido... [more]
HOX9_ORYSJ3.424e-2472.00Homeobox-leucine zipper protein HOX9 OS=Oryza sati... [more]
HOX9_ORYSI3.424e-2472.00Homeobox-leucine zipper protein HOX9 OS=Oryza sati... [more]
HOX10_ORYSJ3.424e-2472.00Homeobox-leucine zipper protein HOX10 OS=Oryza sat... [more]
HOX10_ORYSI3.424e-2472.00Homeobox-leucine zipper protein HOX10 OS=Oryza sat... [more]
ATB14_ARATH6.458e-2368.00Homeobox-leucine zipper protein ATHB-14 OS=Arabido... [more]
REV_ARATH1.879e-2266.67Homeobox-leucine zipper protein REVOLUTA OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC2461 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2461, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492530 ID=EL492530; Name=EL492530; organism=Citrus sinensis; type=EST; length=251bp
GACTGCGTAGTGATCCATCATTCATATAGTGGATCATATGGATTTAGAGC
CTTGGAGTGTCCCTGAAGTGTTGCGCCCACTTTATGAGTCGTCAACATTG
ATTGCTCAGAAGACAACAATGGCGGCTTTACGCCATCTAAGGCAGATTTC
TCAAGAAGTTTCACAGCCAAGTGTCACTGGTTGGGGGAGAAGGCCTGCAG
CCCTACGTGCTCTTAGTCAGAGATTGAGCAGGGGCTTTACTCAGGACTCA
T
back to top