CX674863

Overview
NameCX674863
Unique NameCX674863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674863_ssr147 microsatellite CX674863_ssr147:147..161. BLAST: Citrus ESTs to Prunus persica proteins V1
CX674863_ssr54 microsatellite CX674863_ssr54:54..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5450 contig Csv1_Contig5450:1..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 3.073e-95
Identity = 175/208 (84.13%), Postives = 193/208 (92.79%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCCSR 792
            YLFKIVIIGDSAVGKSNLL+RYARNEFNP+SKATIGVEFQTQSM IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDITR +TF+++ RWLDEL THSDTTVA+ML+GNKCDLESIR VS EEGKSLAE+EGLFFMETSALDSTNVK AFE+VIREIYSN+SRK LNSDSYK EL++NRV+LVK+E +G+K     FSCCSR
Sbjct:   11 YLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRVSLVKNENEGTKT----FSCCSR 214          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 4.906e-93
Identity = 173/207 (83.57%), Postives = 191/207 (92.27%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCCS 789
            YLFKIV+IGDSAVGKSNLLSRYARNEF+ +SKATIGVEFQTQSMEI+GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDITRRTTF+S+ RWLDELK HSDTTVARMLVGNKCDLE+IR VS EEGK+LAE EGLFF+ETSALDSTNVK AFE+VI +IY+NVSRK LNSD+YK EL++NRV+LVK +   SKQ SS FSCCS
Sbjct:   11 YLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELTVNRVSLVKDDNSASKQ-SSGFSCCS 216          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.664e-64
Identity = 120/209 (57.42%), Postives = 161/209 (77.03%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLV--KSETDGSKQTSSYFSCCS 789
            YLFK+V+IGDS VGKSNLLSR+ RNEF+  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+  TF+++ RWL EL+ H+D+ +  MLVGNK DL+ +R+V TE  ++  E EGL F+ETSAL+STNV+ AF+ ++ EIY  VS+KVL+S+  + ++   R  +V   +  DG K+      CCS
Sbjct:   11 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKG---GCCS 216          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.626e-62
Identity = 123/208 (59.13%), Postives = 151/208 (72.60%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNR-VTLVKSETDGSKQTSSYFSCCS 789
            YLFK+V+IGDS VGKSNLLSR++RNEFN  SK+TIGVEF T+S+ +D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDITR  TF+++ RWL EL+ H+D  +  MLVGNK DL  +R VSTE+ K+ AE E  FFMETSAL+S NV+NAF  V+ EIY  V RK L      A L   + + + K +    K+      CCS
Sbjct:   13 YLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVGKDDVSAVKKV----GCCS 216          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.429e-62
Identity = 116/172 (67.44%), Postives = 144/172 (83.72%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVL 684
            Y+FK+V+IGDSAVGKS LL+R+ARNEFN  SKATIGVEFQT+++ ID + VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R +FD ++RWL+EL+ H+D  +  ML+GNK DL ++R V TE+ K  AE E LFFMETSAL+STNV+NAF  V+ EIY  VS+K L
Sbjct:   17 YVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNL 188          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.429e-62
Identity = 119/208 (57.21%), Postives = 155/208 (74.52%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNS-DSYKAELSLNRVTLVKSETDGSKQTSSYFSCCS 789
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+ IDGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR TTF++  RWL EL+ H+D  +  ML+GNK DL  +  VSTE+GK+ AE E L+FMETSAL++TNV+NAF  V+ +IY  VS++ + + D     +  ++   +    D S    + + CCS
Sbjct:   12 YLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSS--VLNRYRCCS 217          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.429e-62
Identity = 114/175 (65.14%), Postives = 148/175 (84.57%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSD 693
            Y+FK+V+IGDSAVGKS +L+R+ARNEF+  SK+TIGVEFQT+++ ID K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R TFD I RWL+EL+ H+D  +  +L+GNKCDL + R+V TE+ K  AE EGLFF+ETSAL++TNV++AF  V+ EIY+ V++K L +D
Sbjct:   16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAAD 190          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.849e-62
Identity = 114/207 (55.07%), Postives = 158/207 (76.33%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCCS 789
            YLFKIV+IGDS VGKSN+LSR+ RNEF   SK+TIGVEF T++++++GK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+R TFD++ RWL EL+ H+D+ +  M+ GNK DL+ +R VS E+G++LAE EGL F+ETSAL++ N++ AF+ ++ EIY  +S+K L +    + L     T+  ++   +++     SCCS
Sbjct:   11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVADASANQRR----SCCS 213          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.849e-62
Identity = 120/210 (57.14%), Postives = 155/210 (73.81%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSY---FSCCS 789
            YLFK+V+IGDS VGKSNLLSR+ +NEFN  SK+TIGVEF T+++ +D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TRR TF++ +RWL EL+ H+D  +  ML+GNK DL  +  V TE+GKS AE E L+FMETSAL++TNV+NAF  V+ +IY  VS++ + +    +   L      K +T   K+ SS    F CCS
Sbjct:   12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPS----KGQTINVKEDSSVLKRFGCCS 217          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.639e-62
Identity = 121/210 (57.62%), Postives = 153/210 (72.86%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSS---YFSCCS 789
            YLFK+V+IGDS VGKSNLLSR+ +NEFN  SK+TIGVEF T+S+ ID K +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  T+++++RWL EL+ H+D  +  ML+GNK DL  +  VST+E K LAE EGL+FMETSAL++TNV+NAF   + +IY  VS+K + +    A  S       K ET   K   S    F CCS
Sbjct:   12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSS----APPKGETINIKDEGSSWKKFGCCS 217          
The following BLAST results are available for this feature:
BLAST of CX674863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA4_ARATH3.073e-9584.13Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH4.906e-9383.57Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPTC6_CHLRE3.664e-6457.42Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11B_TOBAC2.626e-6259.13Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RGP1_ORYSJ3.429e-6267.44Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11E_LOTJA3.429e-6257.21Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11A_LOTJA3.429e-6265.14Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU5.849e-6255.07Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11D_LOTJA5.849e-6257.14Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
YPT3_NICPL7.639e-6257.62Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_9B08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674863 ID=CX674863; Name=CX674863; organism=Citrus sinensis; type=EST; length=797bp
CGCAGTATGTCTGTGCCAGCTTGACACCAGTCGCAGCACCACCACCATTA
TTGTTATTTATTTATTTTTTTTATTTTTTTTCCTTTTAGCTTCCAGTTTC
CATTCAAGGGAATTCAATTCAAAACGATGTCGTCGTCGGATGAAGAAGGA
GGAGGAGGAGGGGAGGAGTACTTGTTCAAGATCGTGATAATCGGCGACTC
GGCGGTGGGGAAATCGAACCTACTGTCTCGTTACGCTCGGAACGAGTTCA
ATCCTCACTCGAAGGCGACAATTGGAGTCGAGTTTCAAACGCAGAGCATG
GAGATCGACGGCAAGGAAGTCAAGGCTCAGATTTGGGACACCGCCGGCCA
GGAGCGCTTCCGCGCCGTCACTTCTGCTTACTACAGAGGCGCCGTCGGTG
CTCTCATTGTTTACGACATTACCAGGCGTACCACTTTTGACAGCATCTCT
CGCTGGCTCGATGAGCTCAAGACTCATTCTGATACCACTGTGGCAAGGAT
GCTGGTCGGGAACAAATGTGATTTGGAGAGTATCCGGAATGTGAGCACTG
AAGAAGGCAAAAGCCTTGCAGAAGCAGAAGGGTTGTTTTTCATGGAAACT
TCTGCATTGGACTCGACGAATGTTAAAAATGCTTTTGAGATTGTCATCCG
AGAGATTTACAGCAATGTCAGCAGGAAGGTCCTGAATTCAGATAGTTACA
AAGCTGAATTATCTCTCAACCGGGTAACCCTCGTAAAATCTGAAACCGAT
GGATCAAAGCAAACATCCAGTTATTTTTCTTGCTGTTCAAGGTGACC
back to top