CX674862

Overview
NameCX674862
Unique NameCX674862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674862 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.128e-47
Identity = 94/123 (76.42%), Postives = 109/123 (88.62%), Query Frame = -2
Query:  333 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCCSR 701
            R +TF+++ RWLDEL THSDTTVA+ML+GNKCDLESIR VS EEGKSLAE+EGLFFMETSALDSTNVK AFE+VIREIYSN+SRK LNSDSYK EL++NRV+LVK+E +G+K     FSCCSR
Sbjct:   96 RSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRVSLVKNENEGTKT----FSCCSR 214          
BLAST of CX674862 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.779e-46
Identity = 94/122 (77.05%), Postives = 107/122 (87.70%), Query Frame = -2
Query:  336 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCCS 701
            RRTTF+S+ RWLDELK HSDTTVARMLVGNKCDLE+IR VS EEGK+LAE EGLFF+ETSALDSTNVK AFE+VI +IY+NVSRK LNSD+YK EL++NRV+LVK +   SKQ SS FSCCS
Sbjct:   96 RRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELTVNRVSLVKDDNSASKQ-SSGFSCCS 216          
BLAST of CX674862 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 54/124 (43.55%), Postives = 82/124 (66.13%), Query Frame = -2
Query:  336 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLV--KSETDGSKQTSSYFSCCS 701
            +  TF+++ RWL EL+ H+D+ +  MLVGNK DL+ +R+V TE  ++  E EGL F+ETSAL+STNV+ AF+ ++ EIY  VS+KVL+S+  + ++   R  +V   +  DG K+      CCS
Sbjct:   96 KSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKG---GCCS 216          
BLAST of CX674862 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 49/90 (54.44%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  432 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSD 701
            +R TFD I RWL+EL+ H+D  +  +L+GNKCDL + R+V TE+ K  AE EGLFF+ETSAL++TNV++AF  V+ EIY+ V++K L +D
Sbjct:  101 KRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAAD 190          
BLAST of CX674862 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 48/120 (40.00%), Postives = 82/120 (68.33%), Query Frame = -2
Query:  336 TTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCCS 695
            TTF+++SRWL EL+ H+D+ +  ML+GNK DL+ +R V+TE+ +S AE EGL F+ETSAL++ NV+ AF+ ++ E+Y  +S+K ++SD   A  ++     +  +   + ++++   CCS
Sbjct:   98 TTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTI--DVAATSESNAKKPCCS 215          
BLAST of CX674862 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.064e-21
Identity = 49/122 (40.16%), Postives = 80/122 (65.57%), Query Frame = -2
Query:  336 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCCS 701
            +R TFD++ RWL EL+ H+D+ +  M+ GNK DL+ +R VS E+G++LAE EGL F+ETSAL++ N++ AF+ ++ EIY  +S+K L +    + L     T+  ++   +++     SCCS
Sbjct:   96 KRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVADASANQRR----SCCS 213          
BLAST of CX674862 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.064e-21
Identity = 56/125 (44.80%), Postives = 78/125 (62.40%), Query Frame = -2
Query:  336 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSY---FSCCS 701
            RR TF++ +RWL EL+ H+D  +  ML+GNK DL  +  V TE+GKS AE E L+FMETSAL++TNV+NAF  V+ +IY  VS++ + +    +   L      K +T   K+ SS    F CCS
Sbjct:   97 RRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPS----KGQTINVKEDSSVLKRFGCCS 217          
BLAST of CX674862 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 46/87 (52.87%), Postives = 68/87 (78.16%), Query Frame = -2
Query:  441 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVL 701
            +R +FD++ RWL EL+ H+D+++  M+VGNK DL  +R VS +EGK+LAE EGLFF+ETSA+++ NV+ AF+ +I E+Y  V+RK L
Sbjct:   96 KRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKAL 182          
BLAST of CX674862 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 56/123 (45.53%), Postives = 73/123 (59.35%), Query Frame = -2
Query:  336 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNR-VTLVKSETDGSKQTSSYFSCCS 701
            R  TF+++ RWL EL+ H+D  +  MLVGNK DL  +R VSTE+ K+ AE E  FFMETSAL+S NV+NAF  V+ EIY  V RK L      A L   + + + K +    K+      CCS
Sbjct:   98 RHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVGKDDVSAVKKV----GCCS 216          
BLAST of CX674862 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 53/125 (42.40%), Postives = 80/125 (64.00%), Query Frame = -2
Query:  336 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSL---NRVTLVKSETDGSKQTSSYFSCCS 701
            +R TFD++ RWL EL+ H+D+ +  M+ GNK DL  +R+V+ E+G+SLAE EGL F+ETSAL++TNV+ AF+ ++ EIY  +S+K L +    A  S       T+   +T G  +     +CCS
Sbjct:   96 KRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDTSGGAKR----ACCS 216          
The following BLAST results are available for this feature:
BLAST of CX674862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
ARA4_ARATH1.128e-4776.42Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH2.779e-4677.05Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPTC6_CHLRE9.619e-2343.55Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11A_LOTJA2.143e-2254.44Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAA2A_ARATH6.235e-2240.00Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB2BV_BETVU1.064e-2140.16Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11D_LOTJA1.064e-2144.80Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RGP2_ORYSJ2.369e-2152.87Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11B_TOBAC2.369e-2145.53Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA2C_ARATH2.369e-2142.40Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9B08-C15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674862 ID=CX674862; Name=CX674862; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTTTTTGGAATATTAATAAGAAAATTAACAACTGAATAT
AAACACGGTCACTTGGCATAATACAAAATCACAAAGAAATAGCTGTCTGC
TTAATTTATGCAGCAAAAATTTAACTCTTCTTTTTCTTGAGTGAAATGTA
ACAAATCATTTCTATAATACCACCTTATTTGGTGATTAGACATGCCTAAA
AGACACCCATTTAGGAACAAACAAGCAAACAGCAGGCTGAATAAATTAAA
ATTTTAAAATTAGCAAACCAAACACTGAGACGTATTGCAGGTTGTACAGT
TTCTGGAGGATGTAATATAAGAATAGAGGTCACCTTGAACAGCAAGAAAA
ATAACTGGATGTTTGCTTTGATCCATCGGTTTCAGATTTTACGAGGGTTA
CCCGGTTGAGAGATAATTCAGCTTTGTAACTATCTGAATTCAGGACCTTC
CTGCTGACATTGCTGTAAATCTCTCGGATGACAATCTCAAAAGCATTTTT
AACATTCGTCGAGTCCAATGCAGAAGTTTCCATGAAAAACAACCCTTCTG
CTTCTGCAAGGCTTTTGCCTTCTTCAGTGCTCACATTCCGGATACTCTCC
AAATCACATTTGTTCCCGACCAGCATCCTTGCCACAGTGGTATCAGAATG
AGTCTTGAGCTCATCGAGCCAGCGAGAGATGCTGTCAAAAGTGGTACGCC
TG
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