CX674831

Overview
NameCX674831
Unique NameCX674831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig448 contig Csv1_Contig448:77..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674831 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.236e-81
Identity = 158/219 (72.15%), Postives = 172/219 (78.54%), Query Frame = -2
Query:   97 STVALFXXXXXXXXXXXKVESKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 753
            +TVALF             + K KVED           TKQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP          LGAIGAL DRGKF+D+P  PTGL  AVIPPGK  +SALGL EGGP+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct:   56 TTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274          
BLAST of CX674831 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.838e-81
Identity = 154/200 (77.00%), Postives = 167/200 (83.50%), Query Frame = -2
Query:   97 ESKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 696
            + K KVED           TKQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP          LGAIGALGDRGKFVD+P  PTGL  AVIPPGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:   77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 92.8189 bits (229), Expect = 2.165e-18
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = -2
Query:  109 VIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 390
            V PP +  +   G+       GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKFV D
Sbjct:   73 VAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168          
BLAST of CX674831 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.200e-79
Identity = 151/200 (75.50%), Postives = 166/200 (83.00%), Query Frame = -2
Query:   97 ESKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 696
            + K KVED           TKQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP          LGAIGALGDRG+F+D+P   TGL  AVIPPGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:   77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = -2
Query:  109 VIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 390
            V PP +  +   G+       GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      G+F+ D
Sbjct:   73 VAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168          
BLAST of CX674831 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 8.359e-79
Identity = 159/220 (72.27%), Postives = 173/220 (78.64%), Query Frame = -2
Query:   97 FSTVALFXXXXXXXXXXXKVESKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 756
            F T+ALF             + K KVED           TK+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP          LGAIGALGDRG+FVDEP   TGL  AVIPPGK +RSALGLK  GP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE
Sbjct:   58 FKTLALFKSKAKAPKKVE--KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPT--TGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273          
BLAST of CX674831 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.990e-77
Identity = 153/198 (77.27%), Postives = 163/198 (82.32%), Query Frame = -2
Query:   97 KPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 690
            K KVED           TK NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP          LGAIGALGDRGKFVD+P  PTGL  AVIPPGK++RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264          
The following BLAST results are available for this feature:
BLAST of CX674831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_TOBAC5.236e-8172.15Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLLC6.838e-8177.00Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLSG2.200e-7975.50Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SPIOL8.359e-7972.27Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_ARATH5.990e-7777.27Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_9A02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9A02-A3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674831 ID=CX674831; Name=CX674831; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTGACGACAAAATATTATCTTTTACATTGAATGGAAATTCAA
GTTTATCATAATAAAGTAAACAGGAACAGCTTCCACGTTTCATCTACTCC
TCATCTTCATCTGTGACAAATTTACCAGTTCCAGGATTCAATGCGGCAAC
AAAGAAGAAGATAACGTTGAACAGCACAAGTGGTTCGATTTCGTTGATGG
GGATCCCAGTCTCAATGTTGAGTTGTGCTAGAGCTCCTTTCCCTGTTATG
ATTTCTCCAATCAAAGAGAATGCAATACCCAACTGAGCCAATCTTCCCAC
AAACAGCTCGTTTGACTTCGTGAATCCAAATATGGGACCTCCTTCCTTGA
GACCCAACGCTGATCTTAAGCTTTTGCCTGGAGGAATGACAGCTCCTCCG
AGCCCAGTGGGCTCATCTGGCTCATCAACGAACTTACCACGGTCACCCAA
AGCTCCAATTGCTCCAAGCAAGGTGAACAAGATGAAAAATAAAAGCAGTG
GCTCTGCTTCATAGATTGGAATTCCGGTCTCTAAATTCAACTGAGCTAGA
ATCCCCTTCCCAGTTATTCCCTCACCCAACAAGGAAGCAGCAAAGCCAAT
CATGGCAACACGACCAACAAAGAGCTCATTTTGCTTTGTAAAACCAAATC
CTCCAGAGGTCCCAAAGATACCATCCTCAACTTTTGGCTTTGATTCAACC
TTCTTGGTCTTGGGTGGAGCTTTGGTTTTAGATTTGAAGAGGGCAACAGT
AGAAAAAGCT
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