CX674821

Overview
NameCX674821
Unique NameCX674821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674821_ssr388 microsatellite CX674821_ssr388:388..399. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8888 contig Csv1_Contig8888:56..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX674821 vs. ExPASy Swiss-Prot
Match: RAGP2_ARATH (RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.349e-48
Identity = 103/183 (56.28%), Postives = 128/183 (69.95%), Query Frame = -1 
Query:  312 YLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNSPDML------ESXXXXXXXXXXXXXXXXXXXXXXXXXXSKMKNLEVKQDD 842
            YLNLED+G +AI NALK SA  +EVLE+AGNDITVEAA  I+ACVAAKQ L KLNL+ENELKD+G +QI+  +E+GH +L+ +DMS+N+IRRAGAR LA VV++K  FK LNID NIISEEGI+E+KEIFK SP++L      +                           SK+KNLEV Q+D
Sbjct:  363 YLNLEDEGAIAIVNALKESASPIEVLEMAGNDITVEAASAIAACVAAKQDLNKLNLSENELKDEGCVQIANCIEEGHSKLQYIDMSTNYIRRAGARALAHVVVKKEAFKLLNIDGNIISEEGIEELKEIFKKSPELLGALDENDPDGEEDDDDEEDEEDEENEGNGNGELESKLKNLEVNQED 545
[Close]
BLAST of CX674821 vs. ExPASy Swiss-Prot
Match: RAGP1_ARATH (RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.633e-41
Identity = 89/137 (64.96%), Postives = 110/137 (80.29%), Query Frame = -1 
Query:  432 YLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNSPDML 842
            YLNLED+GT A++ AL  SAP LEVLELAGNDITV++   ++AC+A+KQ L KLNL+ENELKD+G I I+KA+E GHDQL  VD+S+N IRRAGAR LAQ V++K  FK LNI+ N ISEEGIDEV ++FK+  D L
Sbjct:  358 YLNLEDEGTEALSEALLKSAPSLEVLELAGNDITVKSTGNLAACIASKQSLAKLNLSENELKDEGTILIAKAVE-GHDQLVEVDLSTNMIRRAGARALAQTVVKKNTFKLLNINGNFISEEGIDEVNDMFKDCLDKL 493
The following BLAST results are available for this feature:
BLAST of CX674821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RAGP2_ARATH2.349e-4856.28RAN GTPase-activating protein 2 OS=Arabidopsis tha... [more]
RAGP1_ARATH3.633e-4164.96RAN GTPase-activating protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_8H06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-8H06-P12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674821 ID=CX674821; Name=CX674821; organism=Citrus sinensis; type=EST; length=842bp
TTTTCAGAAAATAGCATCATTGAGAATGTTCAAATAAAATACTACAACAT
CTTCTGCCACATAGAATGGCTTAAGATCTAGAGGTTTCGCAACAAAAAGA
TGTGAAAATTTCCTAGCAACAATTCATCCTCCAGATGGAATATTTTTTAC
GCCCACGGTAGACTAGCAGCCACTGCCCTGCTAATGCATTGTGAGAATTA
ACAGAACGGTTAATCCAAAATGCTGAGATCGTCTTACAATTATTGAGGTC
ACTGATGTCACTACTCTGCAGCAGAATCCATAAAATGGAAGCTCATGTAA
GAGTCTCTTTAATCATCTTGTTTAACTTCAAGATTCTTCATCTTCGACTC
CAATTCATCCTCATTGCCTTCGCCCTCTCCAGATTCTTCATCATCATCAC
CTCCCTCTGGATCATTCTCCTCCAAGGATTCAAGCATGTCAGGAGAATTC
TTAAATATTTCTTTCACCTCATCAATGCCTTCTTCAGAGATGATATTTGC
ATCAATATTCAGCTGTTTAAACCCAGGTTTTTGAATGACAACTTGTGCCA
GTTGTCGAGCCCCTGCCCTTCGTATGAAGTTGCTGCTCATGTCAACTACC
TTTAGCTGGTCATGGCCTTGTTCCAGGGCCTTGCTAATCTGGATAGCACC
ATCATCCTTTAGTTCATTCTCAGCCAAGTTCAACTTGGTAAGGTGCTGCT
TTGCTGCTACACAAGCAGATATAACCGGAGCAGCTTCAACAGTAATGTCA
TTTCCAGCCAGCTCCAGAACTTCAAGTAAAGGAGCAGATCCCTTCAGAGC
GTTAGTTATAGCAACAGTACCGTCATCTTCCAAGTTGAGATA
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