EY665677

Overview
NameEY665677
Unique NameEY665677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665677_ssr181 microsatellite EY665677_ssr181:181..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665677 vs. ExPASy Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 7.744e-87
Identity = 168/227 (74.01%), Postives = 188/227 (82.82%), Query Frame = 1
Query:  115 PTKTHLGFFNNQRQLAVFYNKRXXXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISETTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDITNEVKFA*KNSKKHDKARETSLKASRVKMKTRKPKF 795
            PT +HLGF  NQ++   F NK             R C VITC AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPP+GGNPDSNTLIS+TTTVICLDDYHSLDRTGRKEKGVTALDPRAN+FDLMYEQVKA+K+G +VEKPIYNHVTGLLD PELIKPPKILVIEGLHPM+D+RVR+LLDFSIYLDI+NEVKFA K  ++    R  SL++ +  ++ RKP F
Sbjct:    9 PTTSHLGF--NQKKQLFFCNKSAYKRVSF---SSRPC-VITCLAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAPELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWK-IQRDMAERGHSLESIKASIEARKPDF 228          
BLAST of EY665677 vs. ExPASy Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 7.248e-85
Identity = 163/233 (69.96%), Postives = 188/233 (80.69%), Query Frame = 1
Query:  100 CSLYS-PTKTHLGFFNNQRQLAVFYNKRXXXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISETTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDITNEVKFA*KNSKKHDKARETSLKASRVKMKTRKPKF 795
            C++Y+ PT THLG   NQ    VF+N +            R   VITCS    QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLIS+TTTVICLDD+HSLDR GRK + VTALDP+AN+FDLMYEQVKA+K+G +V+KPIYNHV+GLLDPPELI+PPKILVIEGLHPMYDARVRELLDFSIYLDI+NEVKFA K  ++  K R  SL++ +  +++RKP F
Sbjct:    4 CTVYTIPTTTHLGSSFNQNNKQVFFNYKRSSSSNNTLFTTRPSYVITCS--QQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFHSLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWK-IQRDMKERGHSLESIKASIESRKPDF 233          
BLAST of EY665677 vs. ExPASy Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 5.375e-80
Identity = 159/237 (67.09%), Postives = 180/237 (75.95%), Query Frame = 1
Query:   85 SLNSPCSLYSPTKTHLGFFNNQRQLAVFYNKRXXXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISETTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDITNEVKFA*KNSKKHDKARETSLKASRVKMKTRKPKF 795
            SL SPC+    T  + GF  NQ    +F+  R           + G      S    Q IVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLIS+TTTVICLDDYHSLDRTGRKEKGVTALDP+AN+FDLMYEQVKA+K+G ++EKPIYNHVTGLLDP ELI+PPKI VIEGLHPMYD RVRELLDFSIYLDI+NEVKFA K  ++    R  SL++ +  ++ RKP F
Sbjct:   11 SLRSPCT----TIPNSGFRQNQ---VIFFTTRSSRRSNT----RHGARTFQVSCAVEQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVTGLLDPAELIQPPKIFVIEGLHPMYDERVRELLDFSIYLDISNEVKFAWK-IQRDMAERGHSLESIKASIEARKPDF 235          
BLAST of EY665677 vs. ExPASy Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 6.571e-78
Identity = 146/189 (77.25%), Postives = 168/189 (88.89%), Query Frame = 1
Query:  229 VITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISETTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDITNEVKFA*KNSKKHDKARETSLKASRVKMKTRKPKF 795
            +ITC+    +TIVIGLAADSGCGKSTFMRRLTSVFGGAA+PPKGGNPDSNTLIS+TTTVICLDDYHSLDR GRKE+ VTALDPRAN+FDLMYEQVKA+K+G++VEKPIYNHVTGLLDPPELI+PPKILVIEGLHPM+D RVR+LLDFSIYLDI+NEVKFA K  ++    R  SL++ +  ++ RKP F
Sbjct:   43 LITCA---QETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQPPKILVIEGLHPMFDERVRDLLDFSIYLDISNEVKFAWK-IQRDMAERGHSLESIKASIEARKPDF 227          
BLAST of EY665677 vs. ExPASy Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.285e-65
Identity = 124/184 (67.39%), Postives = 146/184 (79.35%), Query Frame = 1
Query:  244 AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISETTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDITNEVKFA*KNSKKHDKARETSLKASRVKMKTRKPKF 795
            A   +T+VIGLAADSGCGKSTFMRR+TS+FGG  +PP GGNPDSNTLIS+ TTVICLDDYH LDR GRK KGVTAL P A NFDLMY QVKA+K+G SV+KPIYNHV+GL+D PE I+ P ILVIEGLHP YD RV ELLDF IYLDI++++KFA K  ++    R  SL++ +  +  RKP F
Sbjct:   31 ADKDKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHCLDRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNHVSGLIDAPEKIESPPILVIEGLHPFYDKRVAELLDFKIYLDISDDIKFAWK-IQRDMAERGHSLESIKSSIAARKPDF 213          
BLAST of EY665677 vs. ExPASy Swiss-Prot
Match: KPPR_SYNY3 (Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.992e-50
Identity = 102/180 (56.67%), Postives = 124/180 (68.89%), Query Frame = 1
Query:  256 QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISETTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDITNEVKFA*KNSKKHDKARETSLKASRVKMKTRKPKF 795
            + ++IG+A DSGCGKSTF+RRLT +FG                  E  TVICLDDYHSLDR GRK  GVTALDPRANNFDLMYEQ+K +K G S+ KPIYNH TGLLDPPE ++P K++VIEGLHP+YD RVREL+DF +YLDI+ EVK   K  ++    R  + +     +  RKP F
Sbjct:    7 RVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLDDYHSLDRQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHETGLLDPPEKVEPNKVVVIEGLHPLYDERVRELVDFGVYLDISEEVKINWK-IQRDMAERGHTYEDILASINARKPDF 168          
BLAST of EY665677 vs. ExPASy Swiss-Prot
Match: KPPR_VITSX (Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.783e-25
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 1
Query:  319 LTSVFGGAAEPPKGGNPDSNTLISETTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVK 516
            LTSVFGGAAEPP+GGNPDSNTLIS+TTTVICLDDYHSLDR      GVTALDPRAN+FDLMYEQVK
Sbjct:    1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDR------GVTALDPRANDFDLMYEQVK 60          
BLAST of EY665677 vs. ExPASy Swiss-Prot
Match: UCK_CAEEL (Probable uridine-cytidine kinase OS=Caenorhabditis elegans GN=B0001.4 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.304e-11
Identity = 44/148 (29.73%), Postives = 76/148 (51.35%), Query Frame = 1
Query:  262 IVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISETTTVICLDDYHSLDRTGRKEKGVTALDPRAN-------NFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLD 684
            ++IG+A  + CGKST + R+              N ++N   S     I     HS  R    E+ + A + + N       NFDL+ E ++ M DG +VE P Y+ +T  ++    ++P K+++IEG+  +YD RVR+LL   ++++
Sbjct:    9 LLIGVAGGTSCGKSTIVERIIE------------NLNANAKQSGRQIDIVHLSLHSFYRELSAEEKILAREGKFNFDHPDQINFDLLAETLQNMIDGKTVEIPKYDMITSSMNGTVTVEPAKVIIIEGILLLYDERVRKLLSTKLFVE 144          
The following BLAST results are available for this feature:
BLAST of EY665677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
KPPR_MESCR7.744e-8774.01Phosphoribulokinase, chloroplastic OS=Mesembryanth... [more]
KPPR_SPIOL7.248e-8569.96Phosphoribulokinase, chloroplastic OS=Spinacia ole... [more]
KPPR_WHEAT5.375e-8067.09Phosphoribulokinase, chloroplastic OS=Triticum aes... [more]
KPPR_ARATH6.571e-7877.25Phosphoribulokinase, chloroplastic OS=Arabidopsis ... [more]
KPPR_CHLRE1.285e-6567.39Phosphoribulokinase, chloroplastic OS=Chlamydomona... [more]
KPPR_SYNY31.992e-5056.67Phosphoribulokinase OS=Synechocystis sp. (strain P... [more]
KPPR_VITSX3.783e-2586.36Phosphoribulokinase, chloroplastic (Fragments) OS=... [more]
UCK_CAEEL5.304e-1129.73Probable uridine-cytidine kinase OS=Caenorhabditis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665677 ID=EY665677; Name=EY665677; organism=Citrus sinensis; type=EST; length=858bp
CTGAAAGAATCCTAAAACGCCCTTTTCTGCTCTAGCAGCAGCATCCCTCA
CCGAGCCAAAAAAAAGAGAAAGAAAATGGCCATTTCCCTCAACTCACCAT
GCTCTCTTTACTCGCCAACAAAAACCCACTTGGGTTTTTTCAACAACCAA
AGACAACTAGCGGTTTTTTACAACAAGAGAAGCAGCAGCAGCAGCAGCAG
TAGCAGCAGCAAGCAGAGAGGATGTCTTGTGATAACATGCTCAGCAGGTG
ACTCACAGACAATTGTGATTGGTCTGGCGGCAGACTCGGGGTGTGGCAAG
AGCACTTTCATGAGGAGACTAACAAGCGTCTTTGGTGGAGCAGCAGAGCC
ACCAAAGGGCGGCAACCCTGATTCAAACACTCTCATCAGTGAAACCACCA
CTGTGATTTGCTTAGATGATTATCACTCGCTTGACAGAACTGGAAGAAAA
GAAAAGGGTGTCACTGCACTTGATCCTAGAGCCAACAATTTTGATCTTAT
GTATGAACAGGTTAAGGCTATGAAAGATGGAGTGTCTGTTGAAAAGCCCA
TTTACAATCATGTCACCGGTCTCTTGGACCCCCCCGAGCTCATCAAGCCC
CCCAAGATCCTTGTCATTGAAGGCTTGCACCCAATGTATGATGCTCGGGT
GAGAGAGCTCTTGGACTTTAGTATCTATTTGGACATTACCAATGAGGTTA
AATTTGCATGAAAAAATTCAAAAAAACATGACAAAGCGAGGGAAACATCC
TTGAAAGCATCAAGGGTAAAAATGAAAACCCGAAAACCCAAATTTTTGAT
GCCTAAAATTGGGAAACCTTTCCTAAAAGCCATGGTAAAAATTTGACTTA
AAAAACAA
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