CX043318

Overview
NameCX043318
Unique NameCX043318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:581..1240. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043318 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 57/147 (38.78%), Postives = 76/147 (51.70%), Query Frame = -3 
Query:  218 QVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPCDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKPADSKSWL 658
            +V+ F+DF A+KA E++ LA+ GS+ S           A+  N+ +A   K    S  PV         EP   + P                  P S  C+LPIARR SLHRFLEKRKDRI ++APYQ++GSA A  KP  + +WL
Sbjct:  127 RVMVFDDFSAEKAKEVIDLANKGSAKSFTC------FTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEP---IQPN-----------------PASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPT-NPAWL 246
[Close]
BLAST of CX043318 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 57/155 (36.77%), Postives = 75/155 (48.39%), Query Frame = -3 
Query:  203 QVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRP-CDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKP--ADSKSWLGLAAQ 658
            QVI FNDF A+KA E++ LAS G++                 NS A                   K  T+   ++   +N +P+       E  Q    P  +LPIARR SLHRFLEKRKDR+ ++APYQ+   A A   P    + SWLGLAA+
Sbjct:  134 QVIVFNDFSAEKAKEVINLASKGTA-----------------NSLA-------------------KNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNPQTTGNMSWLGLAAE 252
The following BLAST results are available for this feature:
BLAST of CX043318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10B_ARATH2.647e-1638.78Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10A_ARATH1.453e-1436.77Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10C07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10C07-F14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043318 ID=CX043318; Name=CX043318; organism=Citrus sinensis; type=EST; length=660bp
ATTTTCAATAAAGAAGTTAATTACATAAACTATTGGTAAGAAGAATGATC
GTTAGATCTATGGTGGGCTCATCAAAACCCAACCTAAAAGAAGATGGAAG
ATGAAGAAAAACGAAGCAAGGTTTATGTTTGCCAAAAAGACGATGACCGG
CCAATAATCAGTCCCTAAAACTGGATGCAATTTGCACAAACTACTGTGAA
GTTTGAGCAGCCAGGCCAAGCCATGACTTGCTATCAGCGGGCTTGTCTGG
AGCCCCTGCTGAGCCATTCACTTGGTACGGTGCTCTTGCAACAATCCTGT
CTTTTCTCTTCTCCAAGAACCTGTGGAGTGAATTTCTCCTTGCAATTGGT
AGATCACAAGGTCTTGAGGGAGGTTGAGCGCACTCTGGAATTAGATTGTT
GCCAAAGTTAGGAATGCTATTTGATCGAGGAGGAACCGAGCAACTAGGCT
CTGTTAGAATTTTTGGGGGGCCAGGAGAAACCGGGGGAGTTGATTCAACT
GGACTTTTGGGTAAACTAGCAGCAAAAGAGTTGTAACCCTGGGCCGGCAG
TTGCATAGGAGGATATGCGGTACCATGGCTCAGTGAGCTCCCGTTGCTTG
CTAATTGCATGATTTCATTTGCTTTATCAGCAGGAAAATCATTGAACGCA
ATCACTTGTC
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