CX674753

Overview
NameCX674753
Unique NameCX674753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674753_ssr47 microsatellite CX674753_ssr47:47..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7143 contig Csv1_Contig7143:19..500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX674753 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:  154 QPAEKTAMPAVEKEA---PVTLPETDEASNKETETPKSSSGDDAESEQK--VPES-GSFKEESTRVGDLPDNEKKALDELKQVVQEALNKHEFS 417
            + A+ T  P  E  A   P T+ ET+ AS ++ E    +S  +   E+K  +P++ GSFKEES+++ DL ++EKK+LDELK +V+EAL+ H+F+
Sbjct:   51 ETADTTTKPEEETAAEHHPPTVTETETASTEKQEVKDEASQKEVAEEKKSMIPQNLGSFKEESSKLSDLSNSEKKSLDELKHLVREALDNHQFT 144
The following BLAST results are available for this feature:
BLAST of CX674753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PATL3_ARATH7.529e-1241.49Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_8E02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-8E02-J4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674753 ID=CX674753; Name=CX674753; organism=Citrus sinensis; type=EST; length=482bp
ATTCTTTATTTATTTGGTTGGGCTCTTAATTAGAAATAATTAATATCAGC
AGCAGCAGCAGCAGCAGCAACTATGGCGGAGGAAGTTCAAAAGACAGAGT
CCCAAGAGACAGCTGCTCAAGTTGAAGAGGTGGTGGTTCAAACTGATCAT
GTGCAGCCGGCTGAGAAGACTGCAATGCCGGCGGTAGAGAAAGAGGCACC
GGTGACATTGCCGGAGACTGATGAGGCTTCTAATAAAGAGACTGAGACTC
CGAAATCCAGCAGTGGTGACGATGCTGAGAGTGAGCAGAAGGTGCCCGAG
TCTGGTTCTTTTAAGGAAGAAAGCACTAGAGTGGGTGATCTTCCGGATAA
TGAGAAGAAAGCGCTAGACGAGCTTAAGCAGGTTGTTCAAGAAGCGCTTA
ACAAGCATGAGTTTAGTGCTAAAACAACACCAACACCAACACCAACACCA
GCACCGGCAGCAACAAAAGAAGAAAAAAAAAA
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