CX674727

Overview
NameCX674727
Unique NameCX674727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:814..1433. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 6.984e-69
Identity = 127/151 (84.11%), Postives = 132/151 (87.42%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSI AIW CQVVLMGFVEGYR+               GAFDPLGLADDPD FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  115 PEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.654e-68
Identity = 127/151 (84.11%), Postives = 131/151 (86.75%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSI AIW  QVVLMGFVEGYR+               GAFDPLGLADDPD FAELKVKELKNGR AMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  113 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.654e-68
Identity = 127/151 (84.11%), Postives = 131/151 (86.75%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSI AIW  QVVLMGFVEGYR+               GAFDPLGLADDPD FAELKVKELKNGR AMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  113 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.934e-67
Identity = 125/151 (82.78%), Postives = 130/151 (86.09%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSI AIW CQVVLMGFVEGYR+               GAFDPLGLADDP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGPIENL DHI DPVANNAWAYATNFVPGK
Sbjct:  115 PEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 8.538e-67
Identity = 124/151 (82.12%), Postives = 130/151 (86.09%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSI AIW  QVVLMGFVEGYR+               GAFDPLGLADDP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWA+ATNFVPGK
Sbjct:  115 PEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.902e-66
Identity = 122/151 (80.79%), Postives = 130/151 (86.09%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSI A+W  QVVLMG +EGYR+               GAFDPLGLADDP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  115 PEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.484e-66
Identity = 122/151 (80.79%), Postives = 130/151 (86.09%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+L KNGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSI AIW  QVVLMGFVEGYR+               GAFDPLGLADDPD FAELKVKELKNGR AMFSMFGFFVQAIVTGKGPI+NLYDH+ADPVANNAWA+ATNFVPG+
Sbjct:  115 PELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.244e-66
Identity = 125/151 (82.78%), Postives = 129/151 (85.43%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSI AIW  QVVLMGFVEGYR+               GAFDPLGLADDP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWAYATNFVPGK
Sbjct:   87 PEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.534e-66
Identity = 121/151 (80.13%), Postives = 129/151 (85.43%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+L+KNG+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSI AIW CQVVLMG +EGYR+               GAFDPLGLADDP+  AELKVKE+KNGR AMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:  116 PELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.233e-65
Identity = 121/150 (80.67%), Postives = 127/150 (84.67%), Query Frame = -2
Query:  167 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 616
            E+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI AIW CQVVLMG +EGYR+                AFDPLGLADDP+  AELKVKE+KNGR AMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
The following BLAST results are available for this feature:
BLAST of CX674727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB21_GOSHI6.984e-6984.11Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_ORYSJ2.654e-6884.11Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.654e-6884.11Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC2.934e-6782.78Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP8.538e-6782.12Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC1.902e-6680.79Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB215_PEA2.484e-6680.79Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB25_SOLLC3.244e-6682.78Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_PINTH5.534e-6680.13Chlorophyll a-b binding protein type I, chloroplas... [more]
CB22_PINSY1.233e-6580.67Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_8C11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-8C11-F22-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674727 ID=CX674727; Name=CX674727; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTGGAAATAAAAGATCAGGAGCATAGCATTTCTAA
TGGTAACATTACAGAGCTACTAATAAGTCCATGACAGAGTTTTCCACAAA
AGCACATACGATACATAGAATAATGTTACAGCTGAAAAAGACACCATCAA
GTCATGAGTTTCTTTACTTTCCGGGAACAAAGTTAGTGGCATAAGCCCAG
GCATTGTTGGCCACAGGATCAGCAATGTGGTCGTAGAGGTTCTCAATTGG
ACCCTTCCCAGTGACAATAGCCTGAACAAAGAATCCAAACATGGAGAACA
TAGCCCGACGGCCATTCTTGAGCTCCTTGACCTTCAACTCAGCAAATTGA
TCGGGGTCATCAGCCAAACCAAGTGGGTCAAAAGCACCACCAGGGTAAAG
TGGGTCAAGTCCTTCACCAAGAGGACCGCCACCAATTCTGTATCCTTCAA
CAAAACCCATAAGCACAACCTGGCAGGGCCAGATAGCCCAAATGCTCTGA
GCATGAATGAGGTTGGGGTTGCCAAGATAGTCAAGGCCACCTTCAGAGAA
TATTTGAGCGCCAGCCTTGAACCAAACTGCTTCGCCGAACTTCACTCCAT
TCTTGGAGAGGATTTCAGGG
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