CV887007

Overview
NameCV887007
Unique NameCV887007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887007 vs. ExPASy Swiss-Prot
Match: MATK_GOMPU (Maturase K OS=Gomphrena pulchella GN=matK PE=3 SV=1)

HSP 1 Score: 23.483 bits (49), Expect = 0.000e+0
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = -1 
Query:  609 NWTSQVPSFQKVHFLK 656
            NWTS++ S + + FLK
Sbjct:  188 NWTSRITSKESISFLK 203

HSP 2 Score: 20.4014 bits (41), Expect = 0.000e+0
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = -2 
Query:  479 SALTSTNFGALLASI 523
            S L ST+FGALL  I
Sbjct:  233 SYLRSTSFGALLERI 247
[Close]
BLAST of CV887007 vs. ExPASy Swiss-Prot
Match: MATK_FROFL (Maturase K OS=Froelichia floridana GN=matK PE=3 SV=1)

HSP 1 Score: 23.483 bits (49), Expect = 0.000e+0
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = -1 
Query:  609 NWTSQVPSFQKVHFLK 656
            NWTS++ S + + FLK
Sbjct:  188 NWTSRITSKESISFLK 203

HSP 2 Score: 20.4014 bits (41), Expect = 0.000e+0
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = -2 
Query:  479 SALTSTNFGALLASI 523
            S L ST+FGALL  I
Sbjct:  233 SYLRSTSFGALLERI 247
[Close]
BLAST of CV887007 vs. ExPASy Swiss-Prot
Match: LNT2_LEPIN (Apolipoprotein N-acyltransferase 2 OS=Leptospira interrogans GN=lnt2 PE=3 SV=2)

HSP 1 Score: 23.0978 bits (48), Expect = 0.000e+0
Identity = 11/34 (32.35%), Postives = 17/34 (50.00%), Query Frame = -1 
Query:  411 FNQFWCTTCIHRKYQELFQLHWALGIGQ*STRFH 512
            F  FW +   H KY++LF     +G+   +  FH
Sbjct:   47 FGFFWLSLKYHGKYKKLFFHGLLIGVVFYAISFH 80

HSP 2 Score: 21.557 bits (44), Expect = 0.000e+0
Identity = 10/21 (47.62%), Postives = 16/21 (76.19%), Query Frame = -2 
Query:  596 ETGHPRFQAFKKSIF*SALFC 658
            +T H RFQ F+K+I+ + +FC
Sbjct:    2 DTLHHRFQQFQKTIWFN-IFC 21
[Close]
BLAST of CV887007 vs. ExPASy Swiss-Prot
Match: LNT2_LEPIC (Apolipoprotein N-acyltransferase 2 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=lnt2 PE=3 SV=2)

HSP 1 Score: 23.0978 bits (48), Expect = 0.000e+0
Identity = 11/34 (32.35%), Postives = 17/34 (50.00%), Query Frame = -1 
Query:  411 FNQFWCTTCIHRKYQELFQLHWALGIGQ*STRFH 512
            F  FW +   H KY++LF     +G+   +  FH
Sbjct:   47 FGFFWLSLKYHGKYKKLFFHGLLIGVVFYAISFH 80

HSP 2 Score: 21.557 bits (44), Expect = 0.000e+0
Identity = 10/21 (47.62%), Postives = 16/21 (76.19%), Query Frame = -2 
Query:  596 ETGHPRFQAFKKSIF*SALFC 658
            +T H RFQ F+K+I+ + +FC
Sbjct:    2 DTLHHRFQQFQKTIWFN-IFC 21
[Close]
BLAST of CV887007 vs. ExPASy Swiss-Prot
Match: FBN2_MOUSE (Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=1 SV=1)

HSP 1 Score: 22.3274 bits (46), Expect = 0.000e+0
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 1 
Query:  256 GDCKSVWITAQCNCNS 303
            G C+++  T +CNCNS
Sbjct:  775 GICENLRGTYRCNCNS 790

HSP 2 Score: 21.1718 bits (43), Expect = 0.000e+0
Identity = 9/35 (25.71%), Postives = 17/35 (48.57%), Query Frame = 2 
Query:   80 YGEECKRCKVIVTSRRLDVCSKMSDVTVQIEELGE 184
            +GE C+ C    ++    +CS    +TV   ++ E
Sbjct:  730 FGEPCQPCPAKNSAEFHGLCSSGIGITVDGRDINE 764
[Close]
BLAST of CV887007 vs. ExPASy Swiss-Prot
Match: FBN2_HUMAN (Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=3)

HSP 1 Score: 21.1718 bits (43), Expect = 0.000e+0
Identity = 9/35 (25.71%), Postives = 17/35 (48.57%), Query Frame = 2 
Query:   80 YGEECKRCKVIVTSRRLDVCSKMSDVTVQIEELGE 184
            +GE C+ C    ++    +CS    +TV   ++ E
Sbjct:  737 FGEPCQPCPAKNSAEFHGLCSSGVGITVDGRDINE 771

HSP 2 Score: 20.7866 bits (42), Expect = 0.000e+0
Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1 
Query:  256 GDCKSVWITAQCNCNS 303
            G C+++  + +CNCNS
Sbjct:  782 GICENLRGSYRCNCNS 797
[Close]
BLAST of CV887007 vs. ExPASy Swiss-Prot
Match: MAO1_SERP5 (NAD-dependent malic enzyme OS=Serratia proteamaculans (strain 568) GN=sfcA PE=3 SV=1)

HSP 1 Score: 20.4014 bits (41), Expect = 0.000e+0
Identity = 10/25 (40.00%), Postives = 12/25 (48.00%), Query Frame = -3 
Query:  550 SPFFEVHSFVQAIAGGLCSNHHHLP 624
            SPF  VH   Q I    C+N +  P
Sbjct:  444 SPFAPVHYKEQQIPIAQCNNSYIFP 468

HSP 2 Score: 20.4014 bits (41), Expect = 0.000e+0
Identity = 10/25 (40.00%), Postives = 12/25 (48.00%), Query Frame = -2 
Query:  449 SALTSTNFGALLASIGSIKSYFNCI 523
            S L +   GALL  I  I+    CI
Sbjct:  498 SPLATDGHGALLPDIDDIQGVSKCI 522
The following BLAST results are available for this feature:
BLAST of CV887007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MATK_GOMPU0.000e+050.00Maturase K OS=Gomphrena pulchella GN=matK PE=3 SV=... [more]
MATK_FROFL0.000e+050.00Maturase K OS=Froelichia floridana GN=matK PE=3 SV... [more]
LNT2_LEPIN0.000e+032.35Apolipoprotein N-acyltransferase 2 OS=Leptospira i... [more]
LNT2_LEPIC0.000e+032.35Apolipoprotein N-acyltransferase 2 OS=Leptospira i... [more]
FBN2_MOUSE0.000e+050.00Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=1 SV=1[more]
FBN2_HUMAN0.000e+025.71Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=3[more]
MAO1_SERP50.000e+040.00NAD-dependent malic enzyme OS=Serratia proteamacul... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026E11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T3_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887007 ID=CV887007; Name=CV887007; organism=Citrus sinensis; type=EST; length=854bp
GGACACCAAGAGGCTCTCATTTTGAGGGAGCCTGGATGATGTCCGCGAGA
AAATCAATCTGGCAGTGTCAGGAATCCCTTATGGGGAAGAGTGCAAGCGC
TGTAAGGTTATTGTGACAAGTAGACGTTTAGATGTGTGCAGCAAAATGTC
TGATGTAACTGTACAGATTGAAGAACTCGGTGAAGAAGAGAGGTTGAAGC
TGTTCAAGCAAATAGCAAGACTTCCTGATTCTGAAGCTTTTGAGGGAGCA
GCTAAGGTGATTGTAAAAGTGTGTGGATCACTGCCCAGTGCAATTGCAAT
AGTTGCAGGAGCACTGCAGGGTAAGCTTGCTAATGAGTCGAATGAGAGTC
TTGTCAATACCTGGAATGATACTGTGGAGGAGGTTATCAGAGAATGCAGC
TAAGGTGATTGTGAAAGCGTGTGGATCACTGCCCAATGCCCAATGCCCAA
TGCAATTGAAATAGCTCTTGATACTTCCTATGGATGCAAGTAGTGCACCA
AAATTGGTTGAAGTAAGAGCAGAAACACAGTGGCTTGAAACTCTCGAGTG
GGAAGATGATGATGATTACTGCAAAGGCCGCCTGCTATCGCTTGCACAAA
AGAGTGCACTTCAAAAAATGGACTTTTTGAAAGCTTGGAACCTGGGATGT
CCAGTTTCCCAAAAAGCTTCCCTAGAATTACTGAAGCAACAAGCCACCGT
AAAAGTTTAGAAGTTAAAAGACTCCTCAAATGGTGCATCCTCCAACATGT
TTCTCAGATGGAGATGGGATTCTCTGAGTTTCACTACATGTCCTGAAATC
CTGATGCAACATTGAAGCCATAAGTTGAAGTTTGTTGATTATATGCAACT
ATCT
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