EY665647

Overview
NameEY665647
Unique NameEY665647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665647 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.304e-85
Identity = 150/216 (69.44%), Postives = 175/216 (81.02%), Query Frame = 1
Query:   43 MASMALKSFTGLRQSPQEQQHPHFIAQALPRQQ---KFRVSAAKTSPKLTNRNLRVXXXXXXXXXXXXXETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKKTLEVDAVIGADGANSKV 681
            MAS+ALK+FTGLRQS  E  +   ++++LP  Q   + R++A+K+SP++  RNLRV             ETLAK G+ETFLIERK+DNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLR+RA + GASV+NGLF+KMD+P+    PYVL+YT YD    G GEK+TLEVDAVIGADGANS+V
Sbjct:    1 MASIALKTFTGLRQSSPEN-NSITLSKSLPFTQTHRRLRINASKSSPRVNGRNLRVAVVGGGPAGGAAAETLAKGGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMPKAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGANSRV 215          

HSP 2 Score: 45.8246 bits (107), Expect = 1.304e-85
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 3
Query:  681 AKSIHAGEYY*PLGFQEKIKTPDEKRGYYEKIWGKRTVGDKGSPEFLLGGGFPQ 842
            AKSI+AG+Y   + FQE+IK  D+K  YYE +  +  VGD  SP+F  G  FP+
Sbjct:  216 AKSINAGDYEYAIAFQERIKISDDKMKYYENL-AEMYVGDDVSPDF-YGWVFPK 267          
BLAST of EY665647 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 6.422e-85
Identity = 148/217 (68.20%), Postives = 174/217 (80.18%), Query Frame = 1
Query:   49 SMALKSFTGLRQSPQEQQHPHFIAQ-----ALP-RQQKFRVSAAKTSPKLTNRNLRVXXXXXXXXXXXXXETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKKTLEVDAVIGADGANSKV 681
            ++ LKSFTGLRQS  EQ +  F++      +LP R+   RV+AA+ +PKL+NR LRV             ETLA+ G+ET LIERK+DNCKPCGGAIPLCMVGEF+LPLDIIDR+VTKMKMISPSN+AVDIG+TLK HEYIGMVRREVLDAYLRERAEK+GA+VINGLF+KMD P N++ PY L+YTEYDG  G  G KKT+EVDAVIGADGANS+V
Sbjct:    4 TVTLKSFTGLRQSSTEQTN--FVSHVPSSLSLPQRRTSLRVTAARATPKLSNRKLRVAVIGGGPAGGAAAETLAQGGIETILIERKMDNCKPCGGAIPLCMVGEFNLPLDIIDRRVTKMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPYTLHYTEYDGKTGATGTKKTMEVDAVIGADGANSRV 218          

HSP 2 Score: 47.3654 bits (111), Expect = 6.422e-85
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 3
Query:  681 AKSIHAGEYY*PLGFQEKIKTPDEKRGYYEKIWGKRTVGDKGSPEFLLGGGFPQ 842
            AKSI AG+Y   + FQE+I+ PDEK  YYE +  +  VGD  SP+F  G  FP+
Sbjct:  219 AKSIDAGDYDYAIAFQERIRIPDEKMTYYEDL-AEMYVGDDVSPDF-YGWVFPK 270          
BLAST of EY665647 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.126e-66
Identity = 119/185 (64.32%), Postives = 136/185 (73.51%), Query Frame = 1
Query:  133 RQQKFRVSAAKTSPKL-TNRNLRVXXXXXXXXXXXXXETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGV-GEKKTLEVDAVIGADGANSKV 681
            R  +    AA +SPKL + R LRV             E LAK GVET LIERKLDNCKPCGGAIPLCMV EFDLPLD++DRKV KMKMISPSNVAVDIG TL PHEYIGMVRREVLDAYLR RAE  GA V+NGLF++ + P+     YV++Y  YD + G   GEK+T EVDA++GADGANS+V
Sbjct:   30 RMARLVTRAAASSPKLPSGRRLRVAVVGGGPAGGAAAEALAKGGVETVLIERKLDNCKPCGGAIPLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSRV 214          

HSP 2 Score: 43.1282 bits (100), Expect = 3.126e-66
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 3
Query:  681 AKSIHAGEYY*PLGFQEKIKTPDEKRGYYEKIWGKRTVGDKGSPEFLLGGGFPQ 842
            AK + AG+Y   + FQE++K PD+K  YYE+   +  VGD  SP+F  G  FP+
Sbjct:  215 AKDMGAGDYEYAIAFQERVKIPDDKMKYYEE-RAEMYVGDDVSPDF-YGWVFPK 266          
BLAST of EY665647 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 9.578e-56
Identity = 97/147 (65.99%), Postives = 112/147 (76.19%), Query Frame = 1
Query:  241 ETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKKTLEVDAVIGADGANSKV 681
            E L K G+ET+L ERKLDN KPCGGAIPLCMV EFDLP +IIDR+V KMKMISPSN+ V+IGQTLK  EYIGM RREVLD +LRERAEK G  VING   K+D+P     PY L+Y ++    G  GE K L+VD VIGADGANS++
Sbjct:   19 EILVKAGIETYLFERKLDNAKPCGGAIPLCMVDEFDLPPEIIDRRVRKMKMISPSNIEVNIGQTLKDDEYIGMCRREVLDGFLRERAEKLGTKVINGTVYKLDIPSKDSDPYTLHYADH-SVGGTTGEMKILKVDVVIGADGANSRI 164          

HSP 2 Score: 43.5134 bits (101), Expect = 9.578e-56
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 3
Query:  681 AKSIHAGEYY*PLGFQEKIKTPDEKRGYYEKIWGKRTVGDKGSPEF 818
            AK+I AG+Y   + FQE+I+ P++K  YY+++  +  VGD  SP+F
Sbjct:  165 AKAIDAGDYNYAIAFQERIRLPEDKMAYYDEL-AEMYVGDDVSPDF 209          
BLAST of EY665647 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 56/147 (38.10%), Postives = 87/147 (59.18%), Query Frame = 1
Query:  247 LAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHE--YIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKKTLEVDAVIGADGANSKV 681
            +A+ G++  L++R     KPCGGAIP  ++ +FD+P  ++  K+T  +MISP+   VDI     P E  ++GMV RE  D +LRERA K GA  + G +++++  R+  +  V++  +        GE+   E   VIGADGANS+V
Sbjct:   21 MARAGLKVALLDRA-GRIKPCGGAIPPRLIRDFDIPDHLLVAKITSARMISPTGRFVDI-----PIENGFVGMVDREDYDEWLRERAGKAGAERLTGTWLRIE--RDSGKTVVVWRDKV------TGEEMKAETRVVIGADGANSQV 153          
The following BLAST results are available for this feature:
BLAST of EY665647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_TOBAC1.304e-8569.44Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH6.422e-8568.20Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ3.126e-6664.32Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY39.578e-5665.99Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA3.267e-1638.10Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665647 ID=EY665647; Name=EY665647; organism=Citrus sinensis; type=EST; length=869bp
ACCCGCGGTGCTCCACACTCACCCCTGACTGAAGCTCCCACAATGGCATC
AATGGCTCTCAAATCCTTCACTGGCCTCCGCCAATCACCGCAAGAACAAC
AGCACCCCCACTTCATCGCTCAAGCCCTCCCACGTCAGCAAAAATTCCGA
GTCTCCGCGGCAAAAACCAGTCCAAAACTCACCAACCGCAACCTCCGAGT
GGCGGTCATCGGGGGCGGCCCAGCAGGCGGAGCTGCCGCCGAGACGCTCG
CAAAAAATGGCGTCGAAACGTTCCTGATCGAGCGTAAGCTCGACAACTGC
AAGCCCTGCGGCGGGGCCATTCCTCTCTGCATGGTGGGGGAGTTTGACCT
GCCGCTGGACATAATCGACCGGAAGGTGACGAAGATGAAGATGATATCGC
CGTCGAACGTGGCGGTGGACATCGGGCAGACGCTGAAGCCGCACGAGTAT
ATCGGGATGGTGAGGCGGGAGGTTCTGGACGCGTATTTGAGGGAGAGGGC
GGAGAAGAACGGGGCGAGCGTGATTAACGGGCTTTTCATGAAGATGGATT
TGCCGAGGAACTTTGAACAGCCGTACGTTTTGTATTATACGGAGTACGAT
GGGACAAAGGGCGGCGTCGGTGAGAAGAAGACGCTGGAGGTTGATGCTGT
TATCGGAGCTGATGGTGCTAACTCAAAAGTGCCAAGTCCATTCATGCCGG
TGAATATTATTAACCCCTTGGATTTCAGGAAAAAATAAAAACCCCTGATG
AAAAAAGGGGGTACTATGAAAAAATTTGGGGGAAAAGGACCGTGGGGGAT
AAAGGGTCCCCCGAATTTTTATTGGGGGGGGGGTTCCCCCAAAGGGGAGA
TCTTGGGGGGAAATTGGGG
back to top