CX674594

Overview
NameCX674594
Unique NameCX674594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12370 contig Csv1_Contig12370:74..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674594 vs. ExPASy Swiss-Prot
Match: RR5_SPIOL (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.675e-43
Identity = 104/234 (44.44%), Postives = 128/234 (54.70%), Query Frame = 2
Query:  185 RLPKLTLSTVLVRASESDKPN----------------------GIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVSGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGA 817
            R+P    +T L+  S S KP                        I F + +NPDE+   F             + DE P E+E+EIA AYEELYG AY+G S+ GNDVY MDSK KK + FG K+KKEK++DGFEE                 ++FRAI                        QK+AVDARRNI+TVPMTKYLTFPHR++ D+GAA+VMLRPA+PGTGVIAGGA
Sbjct:   20 RIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEEIT-FDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGA 252          
BLAST of CX674594 vs. ExPASy Swiss-Prot
Match: RR5_ARATH (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.675e-43
Identity = 104/205 (50.73%), Postives = 119/205 (58.05%), Query Frame = 2
Query:  206 STVLVRASESDKPNGIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVSGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGA 817
            S  LV+AS +D    I F+D         VF              FDE   ETE+EIA A+EELYGPAY+G S+ G D+YVMDSK KK+S  G K KK+K++DGFEE                 LKFRAI                        QKSA+DARRNIV VPMTKY TFPHRS+GD+GAAKVMLRPASPGTGVIAGGA
Sbjct:   44 SLTLVKASSTDTET-IFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGA 247          
The following BLAST results are available for this feature:
BLAST of CX674594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RR5_SPIOL1.675e-4344.4430S ribosomal protein S5, chloroplastic OS=Spinaci... [more]
RR5_ARATH1.675e-4350.7330S ribosomal protein S5, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674594 ID=CX674594; Name=CX674594; organism=Citrus sinensis; type=EST; length=818bp
AGAGACTGAACTGATCTTCCTTTCTTCTCCACTCTCCCCCAAACGCAGCG
TTACATACACATCACCAATGGCAACAACAGCATCAGCAACAAGAGCAACC
CTTTCTTCTCTCTCGTCATTGTCTTTGTCTCTATCTCTTCACCCGACTCC
CCGCCTCTCATTCCTCTCCACTGCAAAACTCACCAGGCTCCCAAAACTCA
CCCTCTCGACCGTCCTCGTCAGAGCCTCCGAATCCGACAAACCAAACGGC
ATCGTTTTCGACGACTTCAACAACCCAGATGAAGACGCCGCCGTTTTCGA
CCCACCGACGCCCCCGGAGGATTACACTCCCCCGCCCTCCTTCGACGAGC
TCCCAATGGAAACCGAGGACGAAATTGCCGCTGCTTACGAAGAATTGTAC
GGACCCGCGTACGCGGGAGTCAGCGTCTCGGGGAATGATGTTTATGTGAT
GGACTCGAAGGCGAAAAAGACGAGTGCTTTTGGGAAAACGAAGAAGGAGA
AAGTGAAGGATGGGTTTGAAGAAAGAGTGGTTCAAGTCAGAAGAGTGACG
AAGGTGGTCAAAGGAGGGAAGCAGTTGAAGTTTAGAGCTATTGTTGTGGT
TGGTGATAAGAAAGGCCAAGTTGGTGTTGGCGTTGCCAAAGCTAAAGAAG
TTATTGCTGCCGTGCAGAAATCCGCCGTTGATGCTAGGAGGAATATTGTT
ACTGTCCCTATGACTAAGTACTTGACTTTCCCACACAGATCTGATGGTGA
TTTTGGGGCGGCTAAGGTGATGCTCAGACCTGCTTCTCCTGGTACTGGAG
TGATTGCTGGAGGTGCTG
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