CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12370 contig Csv1_Contig12370:417..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_ARATH (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.408e-66
Identity = 137/210 (65.24%), Postives = 156/210 (74.29%), Query Frame = -1
Query:  192 DELPMETEDEIAAAYEELYGPAYAGVSVSGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 818
            DE   ETE+EIA A+EELYGPAY+G S+ G D+YVMDSK KK+S  G K KK+K++DGFEE                QLKFRAI                       VQKSA+DARRNIV VPMTKY TFPHRS+GD+GAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+M+Q+R+V++ERGIPM
Sbjct:   89 DEGSDETEEEIATAFEELYGPAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQERGIPM 298          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_SPIOL (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.137e-66
Identity = 132/210 (62.86%), Postives = 155/210 (73.81%), Query Frame = -1
Query:  192 DELPMETEDEIAAAYEELYGPAYAGVSVSGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 818
            DE P E+E+EIA AYEELYG AY+G S+ GNDVY MDSK KK + FG K+KKEK++DGFEE                 ++FRAI                       VQK+AVDARRNI+TVPMTKYLTFPHR++ D+GAA+VMLRPA+PGTGVIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAVQ M+Q+ +V+R+RGIPM
Sbjct:   94 DEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPM 303          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_PORYE (30S ribosomal protein S5, chloroplastic OS=Porphyra yezoensis GN=rps5 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.430e-26
Identity = 67/163 (41.10%), Postives = 96/163 (58.90%), Query Frame = -1
Query:  192 KTKKEKVKD-GFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 677
            K  K K KD G+EE                +L FR I                       V+K   DA++++VTVP+TK  + PH  +G  GAAKV+LRP++PG+GVIAGG+VR VLE++GV+N L KQLGSNN LNNARA +  + +++ + E +++RG+P+
Sbjct:    6 KQSKGKDKDSGWEERVVQVKRVTKVVKGGKKLSFRVILVIGNEQGQVGVGVGKASDVIGAVKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAKVILRPSAPGSGVIAGGSVRTVLELSGVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPI 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_NOSP7 (30S ribosomal protein S5 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsE PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.174e-26
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D +++++ +P+TK  + PH  DG  G AKV++RPA+PGTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA V A+  ++   EV+ +RGIP+
Sbjct:   69 KKGVADGKKHLIDIPITKSNSIPHPIDGVGGGAKVIMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSNNPLNNARAAVNALSTLRTLSEVAEDRGIPI 170          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_PORPU (30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea GN=rps5 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 66/163 (40.49%), Postives = 96/163 (58.90%), Query Frame = -1
Query:  192 KTKKEKVKD-GFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 677
            K  K K KD G+EE                +L FR I                       V+K   DA++++VTVP+TK  + PH  +G  GAA+V+LRP++PG+GVIAGG+VR VLE++GV+N L KQLGSNN LNNARA +  + +++ + E +++RG+P+
Sbjct:    6 KQGKSKEKDNGWEERVVQVKRVTKVVKGGKKLSFRVILVVGNEQGQVGVGVGKASDVIGAVKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAQVILRPSAPGSGVIAGGSVRTVLELSGVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPI 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNP2 (30S ribosomal protein S5 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsE PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26
Identity = 58/100 (58.00%), Postives = 78/100 (78.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K   DA++++V VP+TK  T  HR +G  G AKVM+RPA+PGTGVIAGGAVR VLE+AGV+N L KQLGS++ LNNARATV A+  ++ +  V++ERG+
Sbjct:   67 RKGVSDAKKHVVDVPLTKTNTITHRINGVAGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSSSPLNNARATVDALGNLRSFSSVAQERGV 166          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ANAVT (30S ribosomal protein S5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsE PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K   D +++++ +P+TK  + PH  DG  G AKVM+RPA+PGTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA V A+  ++   EV+ +RGI
Sbjct:   68 KKGVADGKKHLIDIPITKSNSIPHPIDGVGGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSNNPLNNARAAVNALSTLRTLAEVAEDRGI 167          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ANASP (30S ribosomal protein S5 OS=Anabaena sp. (strain PCC 7120) GN=rpsE PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K   D +++++ +P+TK  + PH  DG  G AKVM+RPA+PGTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA V A+  ++   EV+ +RGI
Sbjct:   68 KKGVADGKKHLIDIPITKSNSIPHPIDGVGGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSNNPLNNARAAVNALSTLRTLAEVAEDRGI 167          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THEEB (30S ribosomal protein S5 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.575e-25
Identity = 55/102 (53.92%), Postives = 79/102 (77.45%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D +++++ VP+TK  + PH + G+ GAA+VM+RPA+PGTGVIAGG+VR VLE+AGV N L KQLGS+N LNNARA + A+  ++ ++EV+ ER IP+
Sbjct:   67 RKGVADGKKHLIDVPITKSNSIPHPTFGEGGAARVMIRPAAPGTGVIAGGSVRTVLELAGVRNVLAKQLGSSNPLNNARAALEALAALRTFQEVAEEREIPI 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CYAP7 (30S ribosomal protein S5 OS=Cyanothece sp. (strain PCC 7424) GN=rpsE PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.575e-25
Identity = 53/102 (51.96%), Postives = 78/102 (76.47%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++ ++ VP+TK  + PH ++G  G A V++RPA+PGTGVIAGGAVR VLE+AGV+N L KQLGS+N LNNARA + A++ ++ + EV++ER +P+
Sbjct:   67 RKGVADGKKQLIEVPLTKASSIPHLTNGASGGASVIMRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSDNPLNNARAAINALETLRTFSEVAKERDVPL 168          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR5_ARATH1.408e-6665.2430S ribosomal protein S5, chloroplastic OS=Arabido... [more]
RR5_SPIOL3.137e-6662.8630S ribosomal protein S5, chloroplastic OS=Spinaci... [more]
RR5_PORYE2.430e-2641.1030S ribosomal protein S5, chloroplastic OS=Porphyr... [more]
RS5_NOSP73.174e-2655.8830S ribosomal protein S5 OS=Nostoc punctiforme (st... [more]
RR5_PORPU5.413e-2640.4930S ribosomal protein S5, chloroplastic OS=Porphyr... [more]
RS5_SYNP27.070e-2658.0030S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_ANAVT9.234e-2657.0030S ribosomal protein S5 OS=Anabaena variabilis (s... [more]
RS5_ANASP9.234e-2657.0030S ribosomal protein S5 OS=Anabaena sp. (strain P... [more]
RS5_THEEB1.575e-2553.9230S ribosomal protein S5 OS=Thermosynechococcus el... [more]
RS5_CYAP71.575e-2551.9630S ribosomal protein S5 OS=Cyanothece sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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