EY665590

Overview
NameEY665590
Unique NameEY665590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.629e-33
Identity = 75/140 (53.57%), Postives = 99/140 (70.71%), Query Frame = 2
Query:  137 HGSGAATS-DPNTSFFGTT*KKATSKIPPSNGPSASFNITAEDY-DNHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVK 550
            +GSGA  S  P+T+FFG++ KK+ +K P ++  S +F I A++  ++ QT  D+W G AYD SDDQQDITR KG VD+LF  PM++ THYAVM SYDYIS+GLR YNL++ +D  YIA A MD LV  I KNF+    +K
Sbjct:   19 NGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIK 156          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.629e-33
Identity = 75/140 (53.57%), Postives = 99/140 (70.71%), Query Frame = 2
Query:  137 HGSGAATS-DPNTSFFGTT*KKATSKIPPSNGPSASFNITAEDY-DNHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVK 550
            +GSGA  S  P+T+FFG++ KK+ +K P ++  S +F I A++  ++ QT  D+W G AYD SDDQQDITR KG VD+LF  PM++ THYAVM SYDYIS+GLR YNL++ +D  YIA A MD LV  I KNF+    +K
Sbjct:   19 NGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIK 156          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.765e-32
Identity = 81/174 (46.55%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  137 HGSGAATSDPNTSFFGTT*KKA-TSKIPPSNGPSASFNITAEDYD---NHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVKESSHLWEYRGDKRPRKIITTLAWF*PRMAFNP 646
            +GSG   S P+++FFGT+ KK  +S++P S   S SF I A D +     QT+ DRW G AYD SDDQQDITR KG VDSLF  PM   THYAV+ S+ Y+S GLR YN ++  D  YIA A +D LV  IAKNFM    +K    L  + G  + +     L +   +M  NP
Sbjct:   19 NGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVF--AKMGINP 190          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.415e-30
Identity = 68/138 (49.28%), Postives = 88/138 (63.77%), Query Frame = 2
Query:  137 HGSGAATSDPNTSFFGTT*KKATSKIPPSNGPSASFNITAEDYDNHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVK 550
            +GS ++ S P+++F G++ KK  S+   S   S S  I A   ++ QT  DRW G A+D SDDQQDITR KG VDSLF  P  + TH+A+M SY+YIS GLR YN ++ +D  YIA A MD LV  I KNFM    +K
Sbjct:   19 NGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMK 156          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.608e-30
Identity = 81/174 (46.55%), Postives = 101/174 (58.05%), Query Frame = 2
Query:  137 HGSGAATSDPNTSFFGTT*KKAT-SKIPPSNGPSASFNITA---EDYDNHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVKESSHLWEYRGDKRPRKIITTLAWF*PRMAFNP 646
            +GSGA  S P ++FFGT+ KKA  S++P S   + SF I A   E  ++ QT  DRW G AYD SDDQQDITR KG VD LF  PM   THYAVM SY+Y+S GLR   L++  D  YIA A +D LV  I KNFM    +K    L  + G  + +     L +   +M  NP
Sbjct:   19 NGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF--AKMGINP 188          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.435e-28
Identity = 71/142 (50.00%), Postives = 87/142 (61.27%), Query Frame = 2
Query:  137 HGSGAATSDPNTSFFGTT*KKATSK-IPPSNGPSASFNITAEDYD---NHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVK 550
            + S A TS P+T+FFG T KK   K +      + S  I AE  D     QT  DRW G   D SDDQQDITR KG VDSLF  P  T TH+AV++SY+Y+S+GLR YNL++ +D  YIA A MD LV  I KNF+    +K
Sbjct:   19 NNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIK 160          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.196e-28
Identity = 75/174 (43.10%), Postives = 99/174 (56.90%), Query Frame = 2
Query:  137 HGSGAATSDPNTSFFGTT*KKATSK-IPPSNGPSASFNITAEDYD---NHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVKESSHLWEYRGDKRPRKIITTLAWF*PRMAFNP 646
            + S A TS P+T+FFG T KK   K +      + S  I AE+ D     QT  DRW G   D SDDQQDI R KG VDSLF  P  T TH+AV++SY+Y+S+GLR YN+++T+D  YIA + MD LV  I KNF+    +K    L  + G  + +     L +   +M  NP
Sbjct:   19 NNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVF--RKMGINP 190          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.615e-27
Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = 2
Query:  137 HGSGA-ATSDPNTSFFGTT*KKAT--SKIPPSNGPS-ASFNITAEDYDNHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVK 550
            +GSG+ A S P ++F G   KK    S+   SN  S  SF + A   D  QT  DRW G AYD SDDQQDITR KG VDS+F  PM T TH+AV+ SY+Y+S+GLR YNL++ +D  YIA A MD LV  I KNF+    +K
Sbjct:   19 NGSGSGAVSAPASTFLG---KKVVTVSRFAQSNKKSNGSFKVLAVKEDK-QTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIK 156          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.754e-26
Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 2
Query:  164 PNTSFFGTT*KKATSKIPPSNGPSASFNITAEDYDNHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVKESSHLWEYRGDKRPRKIITTLAWF*PRMAFNP 646
            PN++F G+   K +S+   S   + +F I AE  +  QT+ D+W G A+D SDDQQDITR KG  D LF  PM T TH AV+ SY+YIS GLR Y+ ++ +D  YIA A MD L   I KNF+    +K    L  + G  + +     L +   +M  NP
Sbjct:   26 PNSAFLGSR-LKVSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF--AKMGINP 183          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.907e-26
Identity = 69/171 (40.35%), Postives = 98/171 (57.31%), Query Frame = 2
Query:  137 HGSGAATSDPNTSFFGTT*KKATSK-IPPSNGPSASFNITAEDYDNHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVKESSHLWEYRGDKRPRKIITTLAWF*PRMAFNP 646
            + S A TS P+T+FFG + KK  +K +      + +  + A++ D  +TK DRW G   + SDDQQDI R KG VDSLF  P  T TH+A+M SY+Y+S+ L+TY L++ +D  YIA A MD LV  I KNF+    +K    L  + G  + +     L +   +M  NP
Sbjct:   19 NNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVD--ETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF--RKMGINP 185          
The following BLAST results are available for this feature:
BLAST of EY665590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA2_LARTR5.629e-3353.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR5.629e-3353.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU4.765e-3246.55Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO3.415e-3049.28Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU7.608e-3046.55Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.435e-2850.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC3.196e-2843.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH4.615e-2751.41Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.754e-2641.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN3.907e-2640.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-C11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665590 ID=EY665590; Name=EY665590; organism=Citrus sinensis; type=EST; length=790bp
CGGACGCGTGGGCACGCACTCTGTGCATTGATTCGCTTTCCATTGCCTGC
ATTACAGCGTGACCCATTAACTACTTCAATCACAGCCGCCCAATTCTCGC
TAGCCTAATGGCTGCTGCTGAACCGTTGAACTATCACATGGCTCTGGCGC
TGCAACCTCTGACCCAAACACATCTTTCTTTGGCACCACCTAGAAGAAGG
CAACCTCAAAGATCCCCCCATCCAACGGCCCTTCTGCCAGCTTCAACATT
ACTGCTGAAGACTATGACAACCATCAGACCAAGCACGACAGATGGAACGG
CCATGCCTACGACGAATCTGATGACCAACAAGACATCACCAGACGAAAAG
GAGCTGTGGACTCTCTGTTCCTACCCCCCATGAGAACCGCAACTCACTAT
GCTGTCATGAGATCGTATGACTACATCAGCCGAGGTCTCCGCACATACAA
CTTGAACGACACGATCGACCGTCTCTACATTGCCACTGCTATCATGGACT
ATCTTGTTGATCCCATCGCCAAGAACTTCATGCCCGCTGCCCAAGTCAAG
GAGTCCTCTCATCTTTGGGAATATCGGGGAGACAAACGACCAAGGAAAAT
CATCACCACGCTAGCTTGGTTTTGACCCAGAATGGCCTTCAACCCCAATT
ATTATGAAATGCCGGTAAAATGGGAAAGGGGAAAAGGCTCAAAAACCCCG
TTTAATTAAATCAGGCAAAAGTTCCCGGGGGGGAAAATTGGAACTAATCT
GGGAAAGGGAAAAAATGGGCTGGCCTTCGGGAAAAAATAA
back to top