CX674541

Overview
NameCX674541
Unique NameCX674541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PPR66_ARATH (Pentatricopeptide repeat-containing protein At1g31790 OS=Arabidopsis thaliana GN=PCMP-A1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.318e-43
Identity = 98/207 (47.34%), Postives = 133/207 (64.25%), Query Frame = 2
Query:  107 QLPLRSPKPTK--PLKTSSNWRETTQSIPANTSSANILLLMDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR-KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGK 712
            QL LR PK  K  P+      +   Q+  +  S+++IL LMD+L LP   D+Y+CL KE   + D  GA EL  HI K  +I+PT+ F+NRLLLMHVSCG+LD  RQ+FD MP RDF+SWA++ +G +++ DY++   LF  M+K  +KG   +  P+WI+ CVLKAC    + ELGKQVH L  KLG     +  L+GSLI FYG+
Sbjct:   39 QLFLRKPKHQKSEPVVVIQQPQIQPQNPSSRCSTSDILRLMDSLSLPGNEDIYSCLAKESARENDQRGAHELQVHIMKS-SIRPTITFINRLLLMHVSCGRLDITRQMFDRMPHRDFHSWAIVFLGCIEMGDYEDAAFLFVSMLKHSQKGAFKI--PSWILGCVLKACAMIRDFELGKQVHALCHKLGFIDEEDSYLSGSLIRFYGE 242          
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 50/154 (32.47%), Postives = 75/154 (48.70%), Query Frame = 2
Query:  257 YTCLIKECTFQKDSAGAFELLNHIRKRVNI-KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712
            Y  L + C  Q++      L +H+          ++  N L+ M+  CG +  ARQ+FD MP R+  SW  +I GYV   + QE   LF+ M+          FP  + +  VL +C      E GKQVHGL  KLG   +I +  ++I+ YG+
Sbjct:   62 YAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNILYARQVFDTMPERNVVSWTALITGYVQAGNEQEGFCLFSSMLSH-------CFPNEFTLSSVLTSC----RYEPGKQVHGLALKLGLHCSIYVANAVISMYGR 204          
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  323 HIRKRVNIKP--TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712
            H RK  +  P  T    N +L  +   G +D+  + FD++P RD  SW  MIVGY ++  Y + I +  +M+K       +    + +  VL +   T  ME GK+VH  + KLG   N+S++ SL+N Y K
Sbjct:   67 HARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEG-----IEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAK 193          
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 2
Query:  257 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712
            Y  L+  C  ++       +  H+ K   +  T L   RLL+ +  C  L+ AR++ DEMP ++  SW  MI  Y       E +T+FAEMM+         F       VL +C+    + LGKQ+HGL+ K     +I +  SL++ Y K
Sbjct:   55 YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYL-RTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTF-----ATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAK 200          
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = 2
Query:  374 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712
            L+  + S G ++ A++LFDE+P++D  SW  MI GY +  +Y+E + LF +MMK        V P    +V V+ AC  + ++ELG+QVH  +   G   N+ +  +LI+ Y K
Sbjct:  206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN------VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 313          
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 49/160 (30.63%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  227 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 706
            N    I    Y  LI  C+  +  A   ++ +HI    N K   +  N +L M+  CG L  AR++FD MP R+  S+  +I GY       E I L+ +M++       LV   +    ++KAC  + ++ LGKQ+H  + KL SS ++    +LI  Y
Sbjct:   60 NSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNS-NCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQED-----LVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMY 213          
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 42/150 (28.00%), Postives = 79/150 (52.67%), Query Frame = 2
Query:  263 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712
            C I +C+      G  E L+ +  +V     +   N L+ ++  C ++DTA +LF E+  ++  SW  +IVGY ++ +  +  ++F E ++ +     + F +      L AC    +M+LG QVHGL  K  +++ ++++ SLI+ Y K
Sbjct:  358 CAIGKCS------GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSS-----ALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAK 496          
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 48/157 (30.57%), Postives = 74/157 (47.13%), Query Frame = 2
Query:  242 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 706
            +  D+YT  C+++ C    D A   E+  H+  R   +  +  +N L+ M+V CG + +AR LFD MP RD  SW  MI GY +     E + LF  M        L+      +  V+ AC    +  LG+ +H  +   G + +IS+  SL   Y
Sbjct:  192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHV-VRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMT-----LTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMY 342          
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 58/229 (25.33%), Postives = 100/229 (43.67%), Query Frame = 2
Query:   62 PCGSNNLINSAVENHQLPLRSPKPTK--PLKTSSNWRETTQSIPANT---SSANILLLM-------DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712
            P  +NNLIN   ++ QLP  S +  +  P K+S+ W         N     S   L  M       D+  LP  T     ++  C   +        ++ +  +      +   + L+ M+  CG++  AR++FDEMP R+  +W+ M+ GY  + + +E + LF E +        L    +    V+  C  +  +ELG+Q+HGL  K     +  +  SL++ Y K
Sbjct:   50 PLVANNLINFYSKS-QLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKS-CAILSRCDIGRS-------VHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFEN-----LAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSK 264          
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 2
Query:  347 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712
            +P    +NR+LLMHV CG +  AR+LFDE+P R+  S+  +I G+V+  +Y E   LF  M +         F       +L+A     ++ +GKQ+H    KLG   N  ++  LI+ Y K
Sbjct:  155 EPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTF-----AVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSK 271          
The following BLAST results are available for this feature:
BLAST of CX674541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PPR66_ARATH1.318e-4347.34Pentatricopeptide repeat-containing protein At1g31... [more]
PP114_ARATH4.884e-1432.47Pentatricopeptide repeat-containing protein At1g71... [more]
PP168_ARATH1.088e-1333.33Pentatricopeptide repeat-containing protein At2g22... [more]
PP227_ARATH9.211e-1330.92Putative pentatricopeptide repeat-containing prote... [more]
PPR21_ARATH1.203e-1235.96Pentatricopeptide repeat-containing protein At1g08... [more]
PP280_ARATH2.680e-1230.63Pentatricopeptide repeat-containing protein At3g53... [more]
PP377_ARATH3.500e-1228.00Putative pentatricopeptide repeat-containing prote... [more]
PPR45_ARATH5.970e-1230.57Pentatricopeptide repeat-containing protein At1g15... [more]
PP429_ARATH1.330e-1125.33Putative pentatricopeptide repeat-containing prote... [more]
PP427_ARATH1.330e-1134.43Pentatricopeptide repeat-containing protein At5g50... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7B02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7B02-D3-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674541 ID=CX674541; Name=CX674541; organism=Citrus sinensis; type=EST; length=714bp
CGCAAAAGCATTACGTGTTGCGGTTCATTCACCTTCCAGCACCAGCAGAT
TCGTGTGCCATCCTTGTGGCAGCAATAACCTTATCAACTCTGCGGTTGAA
AATCATCAGCTACCTCTACGTAGCCCCAAGCCAACTAAACCTCTTAAAAC
TAGCAGCAATTGGAGAGAGACAACCCAAAGCATTCCCGCAAACACTTCGA
GTGCAAACATTTTACTCTTAATGGACAACCTCTGCTTGCCCATCACCACT
GACATGTACACTTGTCTCATTAAAGAATGCACTTTCCAAAAAGATTCAGC
AGGAGCTTTCGAATTACTGAATCATATTCGAAAGAGAGTAAACATTAAAC
CCACGTTACTGTTCCTCAATCGGCTCCTTCTGATGCACGTGTCCTGCGGT
CAGCTTGATACTGCTCGTCAACTGTTCGATGAAATGCCTCTGAGAGACTT
TAACTCATGGGCCGTCATGATCGTCGGCTACGTCGACGTTGCCGACTATC
AAGAGTGTATAACTCTCTTTGCAGAAATGATGAAGCGTAAAAAAGGTCAT
ATGCTCTTGGTATTCCCTGCCTGGATCATTGTTTGCGTTCTCAAGGCGTG
TGTTTGCACGATGAACATGGAATTAGGAAAGCAGGTACATGGCTTGTTGT
TTAAGTTAGGGAGTAGTAGGAATATTTCGTTAACGGGTTCTTTGATTAAC
TTCTATGGCAAATT
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