CX674541
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PPR66_ARATH (Pentatricopeptide repeat-containing protein At1g31790 OS=Arabidopsis thaliana GN=PCMP-A1 PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.318e-43 Identity = 98/207 (47.34%), Postives = 133/207 (64.25%), Query Frame = 2 Query: 107 QLPLRSPKPTK--PLKTSSNWRETTQSIPANTSSANILLLMDNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKR-KKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLG--SSRNISLTGSLINFYGK 712 QL LR PK K P+ + Q+ + S+++IL LMD+L LP D+Y+CL KE + D GA EL HI K +I+PT+ F+NRLLLMHVSCG+LD RQ+FD MP RDF+SWA++ +G +++ DY++ LF M+K +KG + P+WI+ CVLKAC + ELGKQVH L KLG + L+GSLI FYG+ Sbjct: 39 QLFLRKPKHQKSEPVVVIQQPQIQPQNPSSRCSTSDILRLMDSLSLPGNEDIYSCLAKESARENDQRGAHELQVHIMKS-SIRPTITFINRLLLMHVSCGRLDITRQMFDRMPHRDFHSWAIVFLGCIEMGDYEDAAFLFVSMLKHSQKGAFKI--PSWILGCVLKACAMIRDFELGKQVHALCHKLGFIDEEDSYLSGSLIRFYGE 242
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14 Identity = 50/154 (32.47%), Postives = 75/154 (48.70%), Query Frame = 2 Query: 257 YTCLIKECTFQKDSAGAFELLNHIRKRVNI-KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712 Y L + C Q++ L +H+ ++ N L+ M+ CG + ARQ+FD MP R+ SW +I GYV + QE LF+ M+ FP + + VL +C E GKQVHGL KLG +I + ++I+ YG+ Sbjct: 62 YAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNILYARQVFDTMPERNVVSWTALITGYVQAGNEQEGFCLFSSMLSH-------CFPNEFTLSSVLTSC----RYEPGKQVHGLALKLGLHCSIYVANAVISMYGR 204
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13 Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = 2 Query: 323 HIRKRVNIKP--TLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712 H RK + P T N +L + G +D+ + FD++P RD SW MIVGY ++ Y + I + +M+K + + + VL + T ME GK+VH + KLG N+S++ SL+N Y K Sbjct: 67 HARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEG-----IEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAK 193
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13 Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 2 Query: 257 YTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712 Y L+ C ++ + H+ K + T L RLL+ + C L+ AR++ DEMP ++ SW MI Y E +T+FAEMM+ F VL +C+ + LGKQ+HGL+ K +I + SL++ Y K Sbjct: 55 YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYL-RTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTF-----ATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAK 200
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12 Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = 2 Query: 374 LLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFP-AWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712 L+ + S G ++ A++LFDE+P++D SW MI GY + +Y+E + LF +MMK V P +V V+ AC + ++ELG+QVH + G N+ + +LI+ Y K Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN------VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 313
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 49/160 (30.63%), Postives = 77/160 (48.12%), Query Frame = 2 Query: 227 NLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 706 N I Y LI C+ + A ++ +HI N K + N +L M+ CG L AR++FD MP R+ S+ +I GY E I L+ +M++ LV + ++KAC + ++ LGKQ+H + KL SS ++ +LI Y Sbjct: 60 NSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNS-NCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQED-----LVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMY 213
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12 Identity = 42/150 (28.00%), Postives = 79/150 (52.67%), Query Frame = 2 Query: 263 CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712 C I +C+ G E L+ + +V + N L+ ++ C ++DTA +LF E+ ++ SW +IVGY ++ + + ++F E ++ + + F + L AC +M+LG QVHGL K +++ ++++ SLI+ Y K Sbjct: 358 CAIGKCS------GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSS-----ALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAK 496
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12 Identity = 48/157 (30.57%), Postives = 74/157 (47.13%), Query Frame = 2 Query: 242 ITTDMYT--CLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFY 706 + D+YT C+++ C D A E+ H+ R + + +N L+ M+V CG + +AR LFD MP RD SW MI GY + E + LF M L+ + V+ AC + LG+ +H + G + +IS+ SL Y Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHV-VRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMT-----LTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMY 342
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11 Identity = 58/229 (25.33%), Postives = 100/229 (43.67%), Query Frame = 2 Query: 62 PCGSNNLINSAVENHQLPLRSPKPTK--PLKTSSNWRETTQSIPANT---SSANILLLM-------DNLCLPITTDMYTCLIKECTFQKDSAGAFELLNHIRKRVNIKPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712 P +NNLIN ++ QLP S + + P K+S+ W N S L M D+ LP T ++ C + ++ + + + + L+ M+ CG++ AR++FDEMP R+ +W+ M+ GY + + +E + LF E + L + V+ C + +ELG+Q+HGL K + + SL++ Y K Sbjct: 50 PLVANNLINFYSKS-QLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKS-CAILSRCDIGRS-------VHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFEN-----LAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSK 264
BLAST of CX674541 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11 Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 2 Query: 347 KPTLLFLNRLLLMHVSCGQLDTARQLFDEMPLRDFNSWAVMIVGYVDVADYQECITLFAEMMKRKKGHMLLVFPAWIIVCVLKACVCTMNMELGKQVHGLLFKLGSSRNISLTGSLINFYGK 712 +P +NR+LLMHV CG + AR+LFDE+P R+ S+ +I G+V+ +Y E LF M + F +L+A ++ +GKQ+H KLG N ++ LI+ Y K Sbjct: 155 EPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTF-----AVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSK 271 The following BLAST results are available for this feature:
BLAST of CX674541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CX674541 ID=CX674541; Name=CX674541; organism=Citrus sinensis; type=EST; length=714bpback to top |