CV886538

Overview
NameCV886538
Unique NameCV886538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV886538 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.412e-14
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:  420 YKECLKNHAASIGGHALDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRREPDQDHHLP 599
            ++ECLKN A +IGGHA+DGCGEFM            LKCAACGCHRNFHR+E    HH P
Sbjct:   75 FRECLKNQAVNIGGHAVDGCGEFM--PAGIEGTIDALKCAACGCHRNFHRKELPYFHHAP 132
[Close]
BLAST of CV886538 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3 
Query:  414 VTYKECLKNHAASIGGHALDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRREPDQDHHLPH-VPT 611
            + Y+ECLKNHA +IGGHA+DGC EFM            LKCAACGCHRNFHR+E +      H VPT
Sbjct:   47 IRYRECLKNHAVNIGGHAVDGCCEFM--PSGEDGTLDALKCAACGCHRNFHRKETESIGGRAHRVPT 111
The following BLAST results are available for this feature:
BLAST of CV886538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5541_ARATH1.412e-1460.00ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
Y4466_ARATH7.009e-1456.72ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_023G05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_023_T3_G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886538 ID=CV886538; Name=CV886538; organism=Citrus sinensis; type=EST; length=884bp
ATATCATCAATACCATCTTTCTTTCTTCTTCTTCTACCTTCGTTTTTTCC
TCTCCCATTTCATGGACCAAAAATTCAATCTTTTTATCAAAAACCTAACC
CTAACAACTTCTTGAAAGCACTTTTCGTCTCAAAATCACTTTTGTTTTTT
TTATCTCCTCCTCCTCCTTCCAGCTTTTAATTAAATGTTTCAACTCAACC
ATGGACATAACCCCCACCAACAACAACACACTAAACACAAACACTAACTC
CAAGTCCCCTGAAACAGACACCACTGATAATCATCAAACGGGAGCCACTC
GGATCCACTCAGCAAAGCCGTTAACCTTCACAAACGGCGTCTTGAAACGC
CACCAGCCTCAGCCGCAGCACCACCAACGTCACCACCACCACCACCACCA
CCACCCAATTGTTGTAACGTACAAAGAATGCCTCAAGAACCATGCAGCAA
GCATAGGTGGCCATGCACTCGACGGCTGTGGAGAGTTCATGCCGTCCCCG
ACCGCCACCCCCTCAGACCCCACTTCCTTAAAATGCGCCGCCTGCGGCTG
CCATCGTAACTTCCACCGCCGTGAGCCTGATCAAGATCATCATCTCCCTC
ACGTTCCAACAACGGCAACAACAGCAACAATTGAGTATCAGCCTCACCAC
CGCCACCACCCACCACCACCGGTGACGCAGCCACCGTCTCGGAGGAGCCC
CAGCTCTGCATCTCCGCCACCGATCTCTTCCTCATACTACCCGTCAGCAC
CCCATATGTTGCTTGCTCTCTCAGGGAACTTGCAGCAGAGTAGTGCCGCA
GCTGCAGTACCGCAAGAGAACCACCATATTAGCAATAATCATCATCATAA
TAACAATAATATTATGATGAGCAACAGCGGGGGC
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