CX674462

Overview
NameCX674462
Unique NameCX674462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674462_ssr373 microsatellite CX674462_ssr373:373..384. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5153 contig Csv1_Contig5153:59..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674462 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.251e-57
Identity = 126/219 (57.53%), Postives = 155/219 (70.78%), Query Frame = 1
Query:   79 MASSISNPLL-TSNFFGSQILISPPTPKTRRLLVSFPFPSRTKRTTQATAILRKELEPNSASSEAASKRRTVTTEATMAALLLSSIAPQALAVDNTXXXXXXXLV-QAQXXXXXXXXXXXFGQNLLLTAPKPQSQSSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGDSGNGLFSFVGD 729
            MA++ SNPLL +SNF GSQI+IS PTPKT            T ++   + I RK  +     S++    +++ ++A +AALL SS +PQALAV+         +  +AQ           FGQN+L+TAP PQ+QSSDLP+G+QWRYSEFLNAVKKGKVERV+FSKDGS LQLTAVD RRATVIVPNDPDLIDILAMNGVDISVSEG+ GNGLF F+G+
Sbjct:    1 MATTSSNPLLLSSNFLGSQIIISAPTPKT------------TTKSLPFSVISRKRYQ----ISQSEKLMKSLPSQAALAALLFSSSSPQALAVNEPVQPPAPTITAEAQSPNLST-----FGQNVLMTAPNPQAQSSDLPDGTQWRYSEFLNAVKKGKVERVKFSKDGSVLQLTAVDNRRATVIVPNDPDLIDILAMNGVDISVSEGEGGNGLFDFIGN 198          
BLAST of CX674462 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.110e-56
Identity = 127/215 (59.07%), Postives = 152/215 (70.70%), Query Frame = 1
Query:   91 ISNPLLTSNFFGSQILISPPTPKTRRLLVSFPFPSRTKRTTQATAILRKELEPNSASSEAASKRRTVTTEATMAALLLSSIAPQALAVDNTXXXXXXXLVQAQXXXXXXXXXXXFGQNLLLTAPKPQSQSS-DLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGDS-GNGLFSFVGD 729
            ++N LL+SNF GSQI +SPPTPKT +    F F S+ K     + + +K   PNS +S      + + ++A +AALL SSI P A A+DNT        V  Q           F QN++L APKPQ+Q++ +LPE SQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATV VPNDPDLIDILAMNGVDISVSEGDS GNGLF+ +G+
Sbjct:    1 MANSLLSSNFMGSQIFVSPPTPKTTKY---FHFHSKRKSLIPQSILNKK---PNSDNS------KNIPSKAALAALLFSSITPHAYALDNTTPTVPTPRV-IQAEAANPTTSNPFSQNIILNAPKPQAQTNPELPEVSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVTVPNDPDLIDILAMNGVDISVSEGDSAGNGLFNLIGN 202          
BLAST of CX674462 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.669e-51
Identity = 123/218 (56.42%), Postives = 144/218 (66.06%), Query Frame = 1
Query:   79 MASSISNPLLTSNFFGSQILISPPTPKTRRLLVSFPFPSRTKRTTQATAILRKELEPNSASSEAASKRRTVTTEATMAALLLSSI-APQALAVDNTXXXXXXXLVQAQXXXXXXXXXXXFGQNLLLTAPKPQSQSS-DLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGDSGNGLFSFVG 726
            MA S S+ LL++NF G++ +   PTPKT +  +S P   +TK           + + N+ +SE           A ++AL+LSS+  P ALA DN        L               F QN+ LTAPKPQ+QSS DLP+GSQWRYSEFLNAVKKGKVERVRFSKDGS LQLTAVDGRRA VIVPNDPDLIDILAMNGVDISVSEG+ GNGLFSFVG
Sbjct:    1 MAFSTSS-LLSTNFLGARNI---PTPKTTKPSISLPLFFKTK-------FFNSQNDNNNNNSEPIKS-------AAVSALILSSMFTPAALAADNLPPPPPPVLEAQPNQLNPANSTSPFSQNISLTAPKPQAQSSTDLPDGSQWRYSEFLNAVKKGKVERVRFSKDGSVLQLTAVDGRRANVIVPNDPDLIDILAMNGVDISVSEGEQGNGLFSFVG 200          
BLAST of CX674462 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.115e-48
Identity = 124/235 (52.77%), Postives = 145/235 (61.70%), Query Frame = 1
Query:   94 SNPLL--TSNFF-GSQILISPPTPKTRRLLVSFPFPSRTKRTTQATAILRKELEPNSASSEAASKRRTVTTEATMAALLLSSIAPQALAVDNTXXXXXXXLVQAQXXXXXXXXXXXFGQNLLLTAPKPQSQSSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGD-SGNGLFSFVGDXXXXXXXXXXXXXXVRRAQ 786
            SN LL  +SNFF GS I+IS PTPKT R   SFPF   ++   Q T   + E  PN   +   S      ++  +AA+LLSSI+   LA+          +V              F QN +L AP P+S  SDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGS +QLTAVD RRA+VIVPNDPDLIDILAMNGVDISVSEG+ SGN LF+ +G+               RRAQ
Sbjct:    3 SNSLLRSSSNFFLGSHIIISSPTPKTTRK-PSFPFSFVSRAKYQITRSSQDENSPNGKPNSPFS------SQVALAAILLSSISSSPLALAVVDEPASPSVVIESQAVKPSTPSPLFIQNEILKAPSPKS--SDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSVVQLTAVDNRRASVIVPNDPDLIDILAMNGVDISVSEGESSGNDLFTVIGNLIFPLLAFGGLFLLFRRAQ 228          
BLAST of CX674462 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.676e-45
Identity = 110/204 (53.92%), Postives = 129/204 (63.24%), Query Frame = 1
Query:  181 FPFPSRTKRTTQATAILRKELEPNSASSEAASKRRTVTTEATMAALLLSSIAPQALAVDNTXXXXXXXLV-QAQXXXXXXXXXXXFGQNLLLTAPKPQ-SQSSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGDSGNGLFSFVGDXXXXXXXXXXXXXXVRRAQ 786
            F F S+ K     + + +K   PNS + + A  +      A +AALL SSI P A+A+D+         V + +           F QNL+L APK Q S  SDLPE +QWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRA VIVPNDPDLIDILAMNGVDISVSEG+ GNGLFS +G+               RR+Q
Sbjct:    3 FNFHSKRKCIITQSTLNKK---PNSDNFKNAQSK------AALAALLFSSITPHAIALDDAAPIASPPQVMEVEAPNPNTSNPLPFSQNLVLNAPKTQASPVSDLPESTQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRANVIVPNDPDLIDILAMNGVDISVSEGEGGNGLFSVIGNLLFPFIAFAGLFFLFRRSQ 197          
BLAST of CX674462 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.403e-36
Identity = 80/118 (67.80%), Postives = 90/118 (76.27%), Query Frame = 1
Query:  442 NLLLTAPKPQSQSS-DLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGDSG--NGLFSFVGDXXXXXXXXXXXXXXVRRAQ 786
            N LLTAPKP S ++ DLPEG+QWRYSEFL+AVKKGKVERVRFSKDG  LQLTA+DGRRATV+VPNDPDLIDILA NGVDISV+EGD+    G  +FVG+               RRAQ
Sbjct:   81 NALLTAPKPTSSAAADLPEGAQWRYSEFLSAVKKGKVERVRFSKDGGLLQLTAIDGRRATVVVPNDPDLIDILATNGVDISVAEGDAAGPGGFLAFVGNLLFPFLAFAGLFFLFRRAQ 198          
The following BLAST results are available for this feature:
BLAST of CX674462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FTSH5_ARATH4.251e-5757.53Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH_TOBAC2.110e-5659.07Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_MEDSA2.669e-5156.42Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_ARATH2.115e-4852.77Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_CAPAN1.676e-4553.92Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_ORYSJ5.403e-3667.80Cell division protease ftsH homolog 1, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_6F01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-6F01-K2-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674462 ID=CX674462; Name=CX674462; organism=Citrus sinensis; type=EST; length=786bp
AACAGATAAGAAGTAAAAAGAAAGGATCAAAGAGAGGGAGAGACAGAAGA
AAAGACAGAGAAATTAGAAACCAAAGCCATGGCTTCTTCAATTAGCAACC
CGTTGCTCACTTCAAACTTCTTTGGTTCCCAAATCCTTATCTCTCCTCCA
ACTCCCAAAACAAGAAGGTTATTAGTTAGCTTCCCATTTCCTTCAAGAAC
CAAAAGAACTACACAAGCCACTGCAATTCTTAGGAAGGAACTCGAACCCA
ACAGTGCATCCTCAGAAGCCGCCTCAAAGAGAAGGACAGTTACAACTGAA
GCCACTATGGCTGCTTTGCTCTTGTCTTCAATAGCCCCACAAGCCTTAGC
GGTCGACAACACGCCGCCGCCACCGCCGCCGCCGTTAGTCCAAGCTCAGC
CCTCCAAACCAAACCCTTCCAATTCTTCACCTTTTGGTCAAAATCTGTTA
TTGACGGCGCCTAAGCCACAGTCTCAATCCTCTGATCTTCCCGAGGGCAG
CCAATGGCGTTACAGCGAGTTCTTAAACGCCGTTAAAAAAGGCAAAGTTG
AAAGGGTTAGGTTCAGCAAAGACGGTTCTGCACTTCAGTTAACGGCAGTG
GACGGCCGTCGCGCCACTGTTATTGTCCCTAATGATCCGGACCTTATCGA
CATTTTGGCCATGAACGGGGTTGATATATCAGTTTCCGAGGGCGATTCTG
GTAACGGGCTTTTTAGCTTTGTTGGGGATTTACTTTTCCCGTTTCTAGCT
TTCGCCGGATTGTTTTTCTTGGTCCGTCGGGCACAA
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