CX674456

Overview
NameCX674456
Unique NameCX674456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674456 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.815e-23
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = -2
Query:  631 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV*FEEAFQ 876
            V+NYD P Y+KTYIHRAGRTARAG+ G CFT L K EVK F K+L+KADN SC +HS+P   +E+LRPV+ S     EE+ +
Sbjct:  415 VINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKLEESLE 496          
BLAST of CX674456 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = -2
Query:  667 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 879
            NV+NYD P + KT+IHRAGRTARAGQ GRCFTLL   EV+RF KLL+K  +DSCPI+ IP + ++S+R  Y
Sbjct:  399 NVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATY 469          
BLAST of CX674456 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = -2
Query:  637 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV*FEEA 876
            VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A       H + S L++ L P Y+      EE+
Sbjct:  577 VVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEES 656          
BLAST of CX674456 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  661 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 876
            V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A       H IP  L++ L   Y++
Sbjct:  550 VINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYET 621          
The following BLAST results are available for this feature:
BLAST of CX674456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RH1_ORYSJ4.815e-2359.76DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sat... [more]
RH1_ARATH5.886e-2163.38DEAD-box ATP-dependent RNA helicase 1 OS=Arabidops... [more]
DDX51_HUMAN1.717e-1245.00ATP-dependent RNA helicase DDX51 OS=Homo sapiens G... [more]
DDX51_MOUSE3.237e-1143.06ATP-dependent RNA helicase DDX51 OS=Mus musculus G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_6E10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-6E10-I20-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674456 ID=CX674456; Name=CX674456; organism=Citrus sinensis; type=EST; length=880bp
TTTTTTTTTTTTTTTTTATCACAATGCCTCTAATCTTACATTTCCTACCT
GTTGTACAAAAATGTAATACATTGGCAACTGTTTGCTTTTAATATTAACA
AAACTTCAATAAGCTAAATGATGTTGTCCGGCATTTGTCTGCTGGAACGA
GAAATAGAAGAACTGATCAGGAAAAGGTACCAAGTCCTAAGCTCTGACAT
ATTGATCAACTCTTGCAATTTGCTCAACGATGAAGAGTGTTTGCACTTGC
ACTCGATAGTATCGCACCCATAATTATCCTAATAGTCAGAACATTGGATA
AATTACTGCTTTGCATGGCCTGTTACTCTGCCTTTGCCCATTCTTGATAG
CTTGAACCCAATTGTGTGCTTTCTGTGCGCTTCTGATTCAACTGTCTCTT
TTAACTTGTCTAGAGCTGAGACATCCAAAAAGAATATATTGACTCAGTGA
TGAGAAAAGCATAGTAACATTTCACAAGAAAGAAGATAAACTAGTTTTGA
CATTGTCCATGATTCGAGCAAAATGCAACCATCCCCTTCCCCAATGCTCG
GTCTCCACTTGTTTGGTAGAAGCTTCTTCTTACACGGTTCACTCCATGCA
AATCGCAACCAACTTTCCAAAAGGCCTCATCTGAAATGCCTCCTCGAACT
ACACATCCCCAGATTTATAAACTGGACGGAGTGACTCAATCAAACTGGAA
GGGATAGAGTGAATGGGACAGGAGTCATTGTCAGCTTTCTGTAACAGCTT
CTTGAAACGCTTCACCTCATCCTTATGCAACAAAGTGAAGCAACGCCCAA
GCTGGCCAGCTCTTGCAGTTCGGCCAGCACGATGAATATATGTCTTGATA
TATGCAGGCTTATCATAATTAACGACATTG
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