CX674429

Overview
NameCX674429
Unique NameCX674429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1849 contig Csv1_Contig1849:228..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX674429 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.541e-78
Identity = 133/151 (88.08%), Postives = 142/151 (94.04%), Query Frame = -2 
Query:  235 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 687
            RGVNGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPV GTLMIEPTESESK ELDR+CDALISIR+EIA++E G AD+HNNVLKGAPHPPSLLM D WTKPYSREYAA+PA+WLR AKFWP TGRVDNVYGDRNL+CTLLP
Sbjct:  894 RGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVAGTLMIEPTESESKAELDRFCDALISIRKEIAEVEKGNADVHNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAAWLRGAKFWPTTGRVDNVYGDRNLVCTLLP 1044
[Close]
BLAST of CX674429 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.930e-78
Identity = 135/151 (89.40%), Postives = 140/151 (92.72%), Query Frame = -2 
Query:  235 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 687
            RGVNGT AHEFI+DLRG KNTAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIREEIAQIE G  DI+NNVLKGAPHPPS+LM D WTKPYSREYAAYPA WLR AKFWP TGRVDNVYGDRNLICTLLP
Sbjct:  873 RGVNGTCAHEFIIDLRGFKNTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAQIEKGNVDINNNVLKGAPHPPSMLMADAWTKPYSREYAAYPAPWLRSAKFWPTTGRVDNVYGDRNLICTLLP 1023
[Close]
BLAST of CX674429 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 289.656 bits (740), Expect = 1.012e-77
Identity = 134/151 (88.74%), Postives = 140/151 (92.72%), Query Frame = -2 
Query:  235 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 687
            RGVNGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIREEIAQIE G AD+ NNVLKGAPHPPSLLM DTW KPYSREYAA+PA WLR +KFWP TGRVDNVYGDR L+CTLLP
Sbjct:  876 RGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAQIEKGNADVQNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRKLVCTLLP 1026
[Close]
BLAST of CX674429 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.563e-77
Identity = 133/151 (88.08%), Postives = 140/151 (92.72%), Query Frame = -2 
Query:  235 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 687
            RGVNGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIREEI+QIE G AD +NNVLKGAPHPPSLLM DTW KPYSREYAA+PA WLR +KFWP TGRVDNVYGDRNL+CTL P
Sbjct:  882 RGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEISQIEKGNADPNNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRNLVCTLQP 1032
[Close]
BLAST of CX674429 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.046e-74
Identity = 130/151 (86.09%), Postives = 137/151 (90.73%), Query Frame = -2 
Query:  235 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 687
            RGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D++NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  875 RGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDLNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1025
[Close]
BLAST of CX674429 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.195e-74
Identity = 130/151 (86.09%), Postives = 136/151 (90.07%), Query Frame = -2 
Query:  235 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 687
            RGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  872 RGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022
[Close]
BLAST of CX674429 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.195e-74
Identity = 130/151 (86.09%), Postives = 136/151 (90.07%), Query Frame = -2 
Query:  235 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 687
            RGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  872 RGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022
[Close]
BLAST of CX674429 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.785e-74
Identity = 130/151 (86.09%), Postives = 136/151 (90.07%), Query Frame = -2 
Query:  235 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 687
            RGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  872 RGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGTVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022
[Close]
BLAST of CX674429 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.380e-56
Identity = 100/148 (67.57%), Postives = 118/148 (79.73%), Query Frame = -2 
Query:  244 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 687
            +G +G VAHE I+DLR LK +AGIE ED+AKRLMDYGFH PT+SWPVPGTLMIEPTESE+K ELDR+C+A+I+IR EIA+IE G +D   N LK APHP  +L  + W  PYSRE AAYPA WLR  KFWPA  R+DN YGDR+L+CT
Sbjct:  800 KGAHGLVAHECILDLRPLKKSAGIEVEDIAKRLMDYGFHAPTVSWPVPGTLMIEPTESETKAELDRFCEAMIAIRSEIAEIEAGVSDRQQNPLKNAPHPALMLATEPWPYPYSREVAAYPAPWLREYKFWPAVARIDNAYGDRHLVCT 947
[Close]
BLAST of CX674429 vs. ExPASy Swiss-Prot
Match: GCSP_NOSP7 (Glycine dehydrogenase [decarboxylating] OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.421e-55
Identity = 100/151 (66.23%), Postives = 118/151 (78.15%), Query Frame = -2 
Query:  235 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 687
            +G NG VAHE I+DLR LK +A IE +DVAKRLMDYGFH PT+SWPV GT+M+EPTESESK+ELDR+CDALI+IR+EIA+IE GK D  +NVLK APH    L+   W  PYSRE AAYPA W R  KFWPA GR+D  +GDRN +C+ LP
Sbjct:  823 QGKNGLVAHECILDLRSLKKSAAIEIDDVAKRLMDYGFHAPTVSWPVGGTIMVEPTESESKQELDRFCDALIAIRQEIAEIEVGKVDAQDNVLKNAPHTAESLITGEWQHPYSREQAAYPAPWTREYKFWPAVGRIDAAFGDRNFVCSCLP 973
The following BLAST results are available for this feature:
BLAST of CX674429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GCSP_PEA4.541e-7888.08Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_SOLTU5.930e-7889.40Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH1.012e-7788.74Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP1_ARATH8.563e-7788.08Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSPA_FLAPR3.046e-7486.09Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLAAN5.195e-7486.09Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR5.195e-7486.09Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_FLATR6.785e-7486.09Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_THEEB6.380e-5667.57Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]
GCSP_NOSP71.421e-5566.23Glycine dehydrogenase [decarboxylating] OS=Nostoc ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_6D07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-6D07-G14-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674429 ID=CX674429; Name=CX674429; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTGAGTTGCAATCAGCAACTATTGTTATTAAAGAAGCTGATAT
AATTAATCAGTATATCAAAGGGAAGCATTGGGCCATGAGGCTCTGTATTC
ATATATACAATCAAATCAGGAAGTGCTGATGATTCCAAATTTTTCCATGC
TCCTGAAGAAACCTTGCACCAGGGGGCATGTTGATGGCAACTCTAAGCAG
TGGCTGCAGCCTGCTCCTCAGCAACTTGTGCAGCTGGAAGAAGGGTGCAG
ATGAGGTTGCGGTCACCATACACATTGTCAACGCGTCCTGTAGCAGGCCA
GAACTTAGCAAACCGGAGCCAGGAAGCAGGATAGGCTGCATATTCTCGAG
AGTATGGTTTAGTCCATGTATCTCCCATGAGCAAAGATGGTGGATGAGGC
GCCCCCTTCAGGACATTGTTGTGGATATCTGCCTTCCCATTTTCAATCTG
TGCAATTTCTTCTCTGATGGAGATGAGAGCATCACAATACCTGTCCAACT
CTTCCTTGCTTTCACTTTCAGTTGGTTCAATCATAAGTGTGCCTGGAACA
GGCCATGACATTGTTGGTCCATGGAATCCATAATCCATAAGACGTTTGGC
AACATCTTCGGGCTCTATCCCGGCAGTATTCTTCAAGCCTCTTAAGTCCA
CAATGAATTCATGAGCAACTGTTCCATTGACACCACGG
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