CX674375

Overview
NameCX674375
Unique NameCX674375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9337 contig Csv1_Contig9337:395..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.655e-45
Identity = 97/199 (48.74%), Postives = 127/199 (63.82%), Query Frame = 2
Query:    2 KEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 595
            +E ++     ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+AI L+GQ +LG P++V+ S+AEKN                        RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG  KG+GF+ F+  E A+ AL      E+ GR +KV  VT+++
Sbjct:  139 REPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 330          
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 8.655e-45
Identity = 97/199 (48.74%), Postives = 127/199 (63.82%), Query Frame = 2
Query:    2 KEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 595
            +E ++     ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+AI L+GQ +LG P++V+ S+AEKN                        RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG  KG+GF+ F+  E A+ AL      E+ GR +KV  VT+++
Sbjct:  139 REPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 330          
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.132e-43
Identity = 95/199 (47.74%), Postives = 126/199 (63.32%), Query Frame = 2
Query:    2 KEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 595
            +E ++     ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I DRNSRRS+G+ YVEF DV SV +AI L+GQ +LG P++V+ S+AEKN                        RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG  KG+GF+ F+  E A+ AL      E+ GR +KV  VT+++
Sbjct:  139 REPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 330          
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.251e-42
Identity = 93/198 (46.97%), Postives = 125/198 (63.13%), Query Frame = 2
Query:    2 KEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 592
            +E V+     ERD RTVF  Q+  +   RD+ +FFS  GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP+AI L+GQ LLG P++V+ S+AEKN +                      RLYVG+LHFN+TED LR +FEPFG ++ + L  D +TG  KG+GF+ F+  E AR AL      E+ GR ++V  VT++
Sbjct:  152 REPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRL-------AAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 342          
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: RSD1_SCHPO (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe GN=rsd1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.030e-34
Identity = 78/189 (41.27%), Postives = 111/189 (58.73%), Query Frame = 2
Query:   26 DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 592
            + ERD+RTVF  Q+  +   R++Y+FF +AG VRD +++ D+ S RSKGV YVEF    SV  AIALSG+ LLG PV+V+ +EAEKN                        RL V N+HFN+T++ ++ +FEPFG +E V L  D+    KGFG++Q+     ARNAL      ++ GR ++V    D+
Sbjct:  234 EEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKN----RKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418          
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-12
Identity = 54/171 (31.58%), Postives = 79/171 (46.20%), Query Frame = 2
Query:   80 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL------NLNGQLEIVGRAIK 571
            D + +Y+ FS  G +   ++  D N + SKG G+V F +  +   AI AL+G  L GQ + V P  + K                          LYV N++   T++Q +++F  FG +    L  D  G  KGFGFV + + EDA  A+       LNG+   VGRA K
Sbjct:  138 DNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKE-----------RDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296          
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.663e-12
Identity = 56/195 (28.72%), Postives = 89/195 (45.64%), Query Frame = 2
Query:    5 EQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVK--PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 577
            E VE E +   D + +F   +   AD   + E F RAG V  V +I D+ + RS+G G+V       V  A    +G  L G+ + V   P   ++                         R+YVGNL + + +D L  +F   G V   ++  D ++G  +GFGFV ++  E+  NA+     +++ GRAI+VS
Sbjct:   75 EGVEEERNFSPDLK-IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268          
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 58/202 (28.71%), Postives = 90/202 (44.55%), Query Frame = 2
Query:    5 EQVEPEVDPERDQRT------VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK---PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 577
            E VE   D   ++R       +F   +   AD   + E F RAG V  V +I D+ + RS+G G+V       V  A    +G  L G+ + V    P E  +N                        R+YVGNL + + +D L  +F   G V   ++  D ++G  +GFGFV ++  E+  NA+     +++ GRAI+VS
Sbjct:   68 EDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN-------SSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262          
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 53/189 (28.04%), Postives = 85/189 (44.97%), Query Frame = 2
Query:    5 EQVEPEVDPERDQR-----------TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 532
            E  E E D E   +           T+F  ++    D+  + + F   G V   R+I +R + RS+G GYV+F +      AI  + G+ + G+P+    S ++                           L++GNL FN   D + ++F   G V  V++P   ET   KGFG+VQF+ +EDA+ AL+
Sbjct:  144 EDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP------AGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326          
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 48/177 (27.12%), Postives = 85/177 (48.02%), Query Frame = 2
Query:   50 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 577
            V+A  I L   E +  + F   GK+  + L  D   + SKG G+V F +  S   A+  L+ + + GQ + V  ++ ++  ++                      L++ NL   +  ++L + F+PFG++   ++ +DETG  KGFGFV F+  E+A  A+    Q  I G+ + V+
Sbjct:  234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGK-SKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVN-LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVA 408          
The following BLAST results are available for this feature:
BLAST of CX674375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RBM39_PONAB8.655e-4548.74RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_HUMAN8.655e-4548.74RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RBM39_MOUSE2.132e-4347.74RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM23_HUMAN5.251e-4246.97Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]
RSD1_SCHPO4.030e-3441.27RNA-binding protein rsd1 OS=Schizosaccharomyces po... [more]
PABP_YEAST1.946e-1231.58Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ROC1_NICPL5.663e-1228.7230 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY9.659e-1228.7129 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
NSR1_YEAST1.648e-1128.04Nuclear localization sequence-binding protein OS=S... [more]
PABP_DEBHA2.152e-1127.12Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_6A11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-6A11-A22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674375 ID=CX674375; Name=CX674375; organism=Citrus sinensis; type=EST; length=806bp
GAAAGAACAAGTGGAGCCAGAGGTTGACCCTGAACGGGATCAGAGAACAG
TATTTGCGTATCAGATTTGTTTGAAGGCTGATGAAAGAGATGTTTATGAG
TTTTTCTCAAGGGCTGGCAAAGTGCGAGATGTCCGCCTCATAATGGATCG
TAATTCAAGGAGATCCAAAGGGGTCGGGTATGTTGAATTTTATGATGTAA
TGTCTGTACCTATGGCAATAGCACTCTCTGGACAGCCTCTTCTTGGTCAA
CCTGTCATGGTTAAACCTTCAGAAGCTGAAAAGAATCTTGTTCAGTCTAA
TTCATCCATTGCTGGAGCATCAGGTGGAGGCACTGGTCCCTATTCAGGTG
GAGCCAGAAGGCTGTATGTTGGCAATCTCCATTTTAACATGACAGAAGAT
CAACTTCGTCAAGTTTTTGAACCGTTTGGTACTGTGGAGCTTGTGCAACT
GCCGCTTGATGAAACAGGGCATTGTAAAGGTTTTGGTTTTGTCCAGTTTG
CACGCCTTGAAGATGCAAGGAATGCTTTGAATTTGAATGGTCAACTGGAG
ATTGTTGGCCGGGCAATTAAGGTGTCAGCTGTTACTGATCAAAGCGGATT
GCAAGATCTTGGGGCTAATACTACTGGGGATTTTGATGATGACGAAGGTG
GTGGTCTGTCTCTGAATGCGCGTTCTCGAGCACTTCTTATGCAGAAATTG
GATCGTAGTGGCAGTGCTACAACTATTGCTGGTTCTGCAGTCACGCCTGC
AGTCAACAGTACTGCTCTTCCTTTACCAACGGCACCACTTCTTGGAGCTG
CCTCTG
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