CX674375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 8.655e-45 Identity = 97/199 (48.74%), Postives = 127/199 (63.82%), Query Frame = 2 Query: 2 KEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 595 +E ++ ERD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL E+ GR +KV VT+++ Sbjct: 139 REPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 330
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 8.655e-45 Identity = 97/199 (48.74%), Postives = 127/199 (63.82%), Query Frame = 2 Query: 2 KEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 595 +E ++ ERD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL E+ GR +KV VT+++ Sbjct: 139 REPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 330
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.132e-43 Identity = 95/199 (47.74%), Postives = 126/199 (63.32%), Query Frame = 2 Query: 2 KEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 595 +E ++ ERD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRS+G+ YVEF DV SV +AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL E+ GR +KV VT+++ Sbjct: 139 REPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 330
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 5.251e-42 Identity = 93/198 (46.97%), Postives = 125/198 (63.13%), Query Frame = 2 Query: 2 KEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 592 +E V+ ERD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + RLYVG+LHFN+TED LR +FEPFG ++ + L D +TG KG+GF+ F+ E AR AL E+ GR ++V VT++ Sbjct: 152 REPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRL-------AAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 342
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: RSD1_SCHPO (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe GN=rsd1 PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 4.030e-34 Identity = 78/189 (41.27%), Postives = 111/189 (58.73%), Query Frame = 2 Query: 26 DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 592 + ERD+RTVF Q+ + R++Y+FF +AG VRD +++ D+ S RSKGV YVEF SV AIALSG+ LLG PV+V+ +EAEKN RL V N+HFN+T++ ++ +FEPFG +E V L D+ KGFG++Q+ ARNAL ++ GR ++V D+ Sbjct: 234 EEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKN----RKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4) HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-12 Identity = 54/171 (31.58%), Postives = 79/171 (46.20%), Query Frame = 2 Query: 80 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL------NLNGQLEIVGRAIK 571 D + +Y+ FS G + ++ D N + SKG G+V F + + AI AL+G L GQ + V P + K LYV N++ T++Q +++F FG + L D G KGFGFV + + EDA A+ LNG+ VGRA K Sbjct: 138 DNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKE-----------RDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.663e-12 Identity = 56/195 (28.72%), Postives = 89/195 (45.64%), Query Frame = 2 Query: 5 EQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVK--PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 577 E VE E + D + +F + AD + E F RAG V V +I D+ + RS+G G+V V A +G L G+ + V P ++ R+YVGNL + + +D L +F G V ++ D ++G +GFGFV ++ E+ NA+ +++ GRAI+VS Sbjct: 75 EGVEEERNFSPDLK-IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12 Identity = 58/202 (28.71%), Postives = 90/202 (44.55%), Query Frame = 2 Query: 5 EQVEPEVDPERDQRT------VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK---PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 577 E VE D ++R +F + AD + E F RAG V V +I D+ + RS+G G+V V A +G L G+ + V P E +N R+YVGNL + + +D L +F G V ++ D ++G +GFGFV ++ E+ NA+ +++ GRAI+VS Sbjct: 68 EDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN-------SSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11 Identity = 53/189 (28.04%), Postives = 85/189 (44.97%), Query Frame = 2 Query: 5 EQVEPEVDPERDQR-----------TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 532 E E E D E + T+F ++ D+ + + F G V R+I +R + RS+G GYV+F + AI + G+ + G+P+ S ++ L++GNL FN D + ++F G V V++P ET KGFG+VQF+ +EDA+ AL+ Sbjct: 144 EDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP------AGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326
BLAST of CX674375 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11 Identity = 48/177 (27.12%), Postives = 85/177 (48.02%), Query Frame = 2 Query: 50 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 577 V+A I L E + + F GK+ + L D + SKG G+V F + S A+ L+ + + GQ + V ++ ++ ++ L++ NL + ++L + F+PFG++ ++ +DETG KGFGFV F+ E+A A+ Q I G+ + V+ Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGK-SKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVN-LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVA 408 The following BLAST results are available for this feature:
BLAST of CX674375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX674375 ID=CX674375; Name=CX674375; organism=Citrus sinensis; type=EST; length=806bpback to top |