CX674374

Overview
NameCX674374
Unique NameCX674374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2947 contig Csv1_Contig2947:280..1021. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674374 vs. ExPASy Swiss-Prot
Match: CB029_RAT (UPF0760 protein C2orf29 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  438 PRWIRPLPPRFPVLDRELEWLIP-DNNHELLWDHGMCADTSRGAAVRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRKLPELVENNPLIAVDVL 740
            P +IRP PP   + + EL WL P +  H + WD  MC   S G  ++ ++AKA K PL   Q  Q++ EL  DPKLVYH GLTP KLP+LVENNPL+A+++L
Sbjct:  276 PEFIRP-PPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEML 376          
BLAST of CX674374 vs. ExPASy Swiss-Prot
Match: CB029_MOUSE (UPF0760 protein C2orf29 homolog OS=Mus musculus GN=D1Bwg0212e PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  438 PRWIRPLPPRFPVLDRELEWLIP-DNNHELLWDHGMCADTSRGAAVRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRKLPELVENNPLIAVDVL 740
            P +IRP PP   + + EL WL P +  H + WD  MC   S G  ++ ++AKA K PL   Q  Q++ EL  DPKLVYH GLTP KLP+LVENNPL+A+++L
Sbjct:  277 PEFIRP-PPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEML 377          
BLAST of CX674374 vs. ExPASy Swiss-Prot
Match: CB029_HUMAN (UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  438 PRWIRPLPPRFPVLDRELEWLIP-DNNHELLWDHGMCADTSRGAAVRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRKLPELVENNPLIAVDVL 740
            P +IRP PP   + + EL WL P + +H + WD  MC   S G  ++ ++AKA K PL   Q  Q++ EL  DPKLVYH GLTP KLP+LVENNPL+A+++L
Sbjct:  282 PEFIRP-PPPLHICEDELAWLNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEML 382          
BLAST of CX674374 vs. ExPASy Swiss-Prot
Match: CB029_DANRE (UPF0760 protein C2orf29 homolog OS=Danio rerio GN=zgc:163002 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21
Identity = 61/148 (41.22%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  300 PDLPHGCDPNSPEFDFQPGAKTKLGAGSRDETVTGLLTHLSLKGLDPRWIRPLPPRFPVLDRELEWLIP-DNNHELLWDHGMCADTSRGAAVRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRKLPELVENNPLIAVDVL 740
            P L    DP+S    F      ++     +  VTG    L      P +IRP PP   V + EL WL P +  H + WD  MC     G  ++ ++AKA K PL  AQ  Q++ EL  D KLVYH GLTP KLP+LVENNPL+A+++L
Sbjct:  176 PSLLSDPDPDSSNSGFDSSVANQI----TESLVTGPRPPLE-SHFRPEFIRPTPPLL-VCEDELCWLNPCEPEHRVQWDRSMCVRNGTGVEIKRIMAKAFKSPLSAAQQTQLLGELEKDLKLVYHIGLTPAKLPDLVENNPLVAIEML 317          
BLAST of CX674374 vs. ExPASy Swiss-Prot
Match: CB029_DICDI (UPF0760 protein DDB_G0279005 OS=Dictyostelium discoideum GN=DDB_G0279005 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 47/134 (35.07%), Postives = 62/134 (46.27%), Query Frame = 3
Query:  417 LSLKGLDPRWIRPLPPRFPVLDRELEWLIPDNNHELLWDHGMCADTSRGAA--------------------------VRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRKLPELVENNPLIAVDVL 740
            LS    +PR+ R  PP F        W+ P  NH LL  + M +  +   A                          VRDL+ KA+KG L  +Q  Q+  E+  DPKL Y+ GLTP+ LP LVENN  +A+D L
Sbjct:  346 LSFFSFEPRFKRAEPPSF----NPTTWINPSINHGLLLSNPMSSTVAATIAATATSAPTTILIPSPTTTTSYNSKKIVRDLMTKAIKGRLKKSQILQIKNEMDIDPKLAYYSGLTPKNLPFLVENNTQVAIDTL 475          
The following BLAST results are available for this feature:
BLAST of CX674374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CB029_RAT3.066e-2250.00UPF0760 protein C2orf29 homolog OS=Rattus norvegic... [more]
CB029_MOUSE3.066e-2250.00UPF0760 protein C2orf29 homolog OS=Mus musculus GN... [more]
CB029_HUMAN3.066e-2250.00UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29... [more]
CB029_DANRE1.987e-2141.22UPF0760 protein C2orf29 homolog OS=Danio rerio GN=... [more]
CB029_DICDI1.427e-1135.07UPF0760 protein DDB_G0279005 OS=Dictyostelium disc... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_6A10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-6A10-A20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674374 ID=CX674374; Name=CX674374; organism=Citrus sinensis; type=EST; length=742bp
ATTGCTCCCAAAAACCTTCTGCAAATCCATTCATATCTTTAATAATAAAT
TCTGCATGTGATGATGAAGTTGAAAAATTTGAGAGGGCTTTTCTTCTCCA
GTTGTTAAGCTCCAGCAGCTCCAATAGTAATAAAGAGTTTCTCAAACAGT
CAGCTGCAGATTACATCAAAGGTTTTGATCCTTCATCCCATGCCTTCCCT
CAACGTGAGCAGTTGCAGCAGCAGTATTGTGATAAAGTACATCCAGAACC
GTTTAATAGCGCGTATATAAATGCTTCTACAAAAAATGCATTCCCAGACC
CTGATTTGCCACATGGATGTGATCCAAATTCACCAGAGTTTGACTTCCAA
CCTGGAGCCAAAACTAAACTTGGAGCTGGTAGTAGAGATGAAACTGTAAC
AGGATTGTTGACGCATCTGTCATTGAAGGGATTGGATCCTCGGTGGATCA
GGCCACTTCCACCGAGGTTCCCTGTGCTCGATAGGGAGCTTGAGTGGCTC
ATACCTGACAACAATCATGAGCTTCTTTGGGATCACGGCATGTGTGCGGA
TACTAGTAGAGGAGCTGCAGTTAGGGACTTGATTGCCAAAGCTTTGAAGG
GACCTTTGCTGCCTGCGCAATATGAGCAAGTTGTGGTGGAGTTGGCTAAT
GACCCAAAGCTAGTATATCACTGTGGACTGACGCCAAGAAAACTACCGGA
GTTGGTGGAAAACAATCCCCTCATTGCGGTTGATGTCCTTAC
back to top