CX052791

Overview
NameCX052791
Unique NameCX052791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX052791 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 3
Query:    3 SDSERGTRLRFSMHD-KTSIINEDVDLNVRFST--ETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGRDRAMYKIVHCPSVCESCVSLCNDVG--VSNDHARRLALTN 359
            SD + GT + FS  D K  ++    D+N+ F    +  C+  TVWR+D+YD S GKW++TT GV+G PG  TL +WFK E+ G     YK   CPSVC+SC +LC+D+G    +D   RLAL++
Sbjct:   78 SDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG--VLGYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSD 199          
BLAST of CX052791 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 3
Query:   33 FSMHDKTSIINEDVDLNVRFSTETRCN--EPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGRDRAMYKIVHCPSVCESCVSLCNDVGVSNDH--ARRLALTN 359
            F  + K  ++    DLN+ FS    C     TVWR+D YD S G++F+T GGV+GNPG +T+ +WFK E        YK+V CP+VC SC   C DVG+  D    RRLAL++
Sbjct:   96 FPENPKEDVVRVSTDLNINFSAFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEF-CGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSD 207          
BLAST of CX052791 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.247e-12
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = 3
Query:   48 KTSIINEDVDLNVRFSTETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGRDRAMYKIVHCPSVCESCVSLCNDVGVSND--HARRLALTN 359
            K +I+ E VDLNV+F+    CNE T W+VD + P    W +T GG +G  G ++  + FK ++ G   + YK   CPS   + +  CN+V +  D    RRL LTN
Sbjct:   69 KDNIVFESVDLNVKFNITINCNETTAWKVDRF-PGVIGWTVTLGGEKGYHGFESTHSMFKIKKAGLPFS-YKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTN 172          
The following BLAST results are available for this feature:
BLAST of CX052791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC2.313e-2244.3521 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU4.363e-2144.25Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA8.247e-1238.68Latex serine proteinase inhibitor OS=Carica papaya... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_48A12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-48A12-A23-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX052791 ID=CX052791; Name=CX052791; organism=Citrus sinensis; type=EST; length=559bp
CTTCCGACTCAGAAAGAGGAACCCGTTTAAGATTCTCAATGCATGATAAA
ACTAGTATTATCAATGAAGATGTGGATCTGAACGTGAGATTCTCCACAGA
GACTCGCTGCAACGAACCAACAGTATGGAGAGTCGACAGCTATGATCCAT
CGAGAGGAAAATGGTTTATAACAACTGGTGGTGTTGAAGGAAACCCTGGA
GCTCAAACTTTGAAAAACTGGTTTAAGTTTGAGAGAATTGGAAGAGATCG
AGCTATGTACAAGATTGTTCACTGTCCTTCCGTTTGCGAATCCTGTGTAT
CTTTATGCAATGATGTTGGGGTTTCTAACGATCATGCTCGACGTTTGGCT
CTCACTAATGGGCGCGCGCTTGCTGTTGTTCTAGTCCCTGGTAACGAGAG
ATCAGCCTCATGTGCGTCTTGAATGCCCTTGTATCATTACTCTAAATAAT
GGATCGGGCTAGCTCCTTGACGCTTATAACATAAACAAAAATGTCATTGC
TAGCTAGCCTGTGTACCTTTGAACGAAATAAAGTGGCGAATTTTGACTGT
TTAAAAAAA
back to top