CX044431

Overview
NameCX044431
Unique NameCX044431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044431 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  209 FRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSXXXXXXXXXXXXYWLQFGR 490
            ++G    F    DQ +L +A++  + LP +C  G CT+CA RI SG++ QP+A+G+  E   +GY LLCV YP S            Y LQFG+
Sbjct:   10 YQGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDELYALQFGQ 103          
BLAST of CX044431 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  182 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 433
            T KVT+ +   G  HE  VP+D+YIL  AE Q   LPF+CR G C++CA ++ SG + Q +   +  +    GY L CV YP+S
Sbjct:    3 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTS 86          
BLAST of CX044431 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  182 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 433
            T KVT+ +   G  HE  VP+D+YIL  AE Q   LPF+CR G C++CA ++ SG + Q +   +  +    GY L CV YP+S
Sbjct:    3 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTS 86          
BLAST of CX044431 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  182 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 433
            T KVT+ +   G  HE  VP+D+YIL  AE +   LPF+CR G C++CA ++ SG + Q +   +  +    GY L CV YP+S
Sbjct:    3 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTS 86          
BLAST of CX044431 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:   59 TSSTYNNTRNPSSLKCRPRKTVSSELQTTAGVNGSYSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 433
            T ++    ++PSSL    + T    L+T+  ++ S   ++  +KV +     G  HEF  P+D YIL  AE+  + LP++CR G C++CA +I+SG + Q +   +    + +GY L CV YP S
Sbjct:   19 TQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVS---AMAVYKVKLVGP-EGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKS 139          
BLAST of CX044431 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  182 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 433
            ++KVT+ +   G+     VP+D+YIL  AE + I LP++CR G C++CA +IK G+I Q +   +  +    GY L CV YP+S
Sbjct:    3 SYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPAS 86          
BLAST of CX044431 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  176 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 433
            +P+ KVT+ +   G+     VP+D+YIL  AE Q I LP++CR G C++CA +I +G + Q +   +  +    GY L CV YP+S
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTS 86          
BLAST of CX044431 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 46/138 (33.33%), Postives = 66/138 (47.83%), Query Frame = 2
Query:   20 SSCCRKPPLHRQLTSSTYNNTRNPSSLKCRPRKTVSSELQTTAGVNGSYSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 433
            S+   K  L  Q T+    N     S+    R + S  L+ +A   G+   ++   K+   D   G   EF V +DQYIL  AE   + LP++CR G C++CA +I SG + Q +   +      KGY L CV YP S
Sbjct:    8 STSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPD---GQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQS 142          
BLAST of CX044431 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  215 GVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 433
            G  +EF VP+DQYIL  AE   + LP++CR G C++CA +I+ GQ+ Q +   +      KGY L CV YP S
Sbjct:   13 GQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQS 85          
BLAST of CX044431 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  182 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 433
            T+KVT+ +   G+     VP+DQYIL  AE   I LP++CR G C++CA ++ SG + Q +   +  +    GY L CV YP+S
Sbjct:    3 TYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTS 86          
The following BLAST results are available for this feature:
BLAST of CX044431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
FER2_SYNP61.024e-1439.36Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_ANASP6.638e-1442.86Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO6.638e-1442.86Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_NOSMU1.479e-1341.67Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER3_MAIZE2.523e-1333.60Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER_SYNP47.339e-1340.48Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER1_PLEBO9.586e-1339.53Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER3_ARATH1.252e-1233.33Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER1_RAPSA1.252e-1245.21Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER_MASLA2.789e-1240.48Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_17E06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-17E06-J11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044431 ID=CX044431; Name=CX044431; organism=Citrus sinensis; type=EST; length=729bp
GGACTTGCTCGTTCCTCCAAGCTCGTGCTGCCGGAAACCGCCACTTCACC
GGCAACTTACTTCCTCAACATACAACAACACTCGCAATCCCAGTTCCTTA
AAATGCCGCCCTCGTAAAACGGTGTCGTCAGAGCTCCAAACTACGGCGGG
AGTGAATGGTAGCTACTCCCCGTCGATTCCGACTCATAAAGTGACCGTTC
ACGACAGGTTTCGAGGCGTCGTTCACGAGTTCCTCGTCCCCGAGGACCAG
TACATACTACACACTGCAGAATCTCAAAATATCACTCTTCCTTTCGCTTG
CAGGCACGGTTGCTGCACTAGCTGCGCTGTGCGTATAAAATCAGGGCAAA
TTAAGCAGCCCGAGGCACTAGGGATATCAGCTGAACTCAAATCAAAGGGA
TATGCGCTTCTTTGTGTGGGTTACCCATCGTCTGATGTTGAAGTAGAAAC
ACAGGATGAAGACGAGGTATATTGGCTTCAATTTGGAAGATATTTTGCCA
GAGGACCAGTTGAAAGGGATGACTATGCATTGGAGCTAGCGCTGGGCGAT
GAATAAGCAATTTAGAAAGCTGAATAGACATACAGTCCTATTGAGGAAAC
CCTGTGGATTCTATTTTTCAGCCCACTTTTCTTTTTGGCTGCATGTTGTG
TTTGAAAATCTGTTAGAGACGGACAATGTATACTCATCATGAAAGCTTTT
TGATTTCTTATGAAAACCAAACTTCTCCT
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