CX674316

Overview
NameCX674316
Unique NameCX674316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7404 contig Csv1_Contig7404:986..1509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX674316 vs. ExPASy Swiss-Prot
Match: SMT1_ARATH (Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.493e-17
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = -3 
Query:  308 DTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFXXXXXXXXXXXXXXEIFTPMYFFLASKPQ 523
            D +HFSLSSFRLT+VGRF+T+NMVK LE++ LAP+GSQRV +F              EIFTPMYFFLA KP+
Sbjct:  265 DKNHFSLSSFRLTAVGRFITKNMVKILEYIRLAPQGSQRVSNFLEQAAEGLVDGGRREIFTPMYFFLARKPE 336
[Close]
BLAST of CX674316 vs. ExPASy Swiss-Prot
Match: SMT1_ORYSJ (Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.816e-16
Identity = 44/71 (61.97%), Postives = 50/71 (70.42%), Query Frame = -3 
Query:  311 DTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFXXXXXXXXXXXXXXEIFTPMYFFLASKP 523
            D S FSLSSFRLT+VGR +TR MVKALE+VGLAP+GS+RV +F              EIFTPMYFFL  KP
Sbjct:  271 DPSRFSLSSFRLTTVGRAITRTMVKALEYVGLAPQGSERVSNFLEKAAEGLVEGGKKEIFTPMYFFLVRKP 341
The following BLAST results are available for this feature:
BLAST of CX674316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SMT1_ARATH1.493e-1761.11Cycloartenol-C-24-methyltransferase OS=Arabidopsis... [more]
SMT1_ORYSJ2.816e-1661.97Cycloartenol-C-24-methyltransferase 1 OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_5F12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5F12-K23-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674316 ID=CX674316; Name=CX674316; organism=Citrus sinensis; type=EST; length=525bp
TTTTTTTTTGCTAGAAAAGGGGAATAGAAATATTACGTTTGTCGGAAGAA
GTTCGCAACATATTTTGTTAAAAGTACAAATGTCTCCATGTTTGAGAAGG
TATAGAAGGAAAAAGACAGAACTGGTCAAGACCTAGAACTAAACAAAAAG
GAAATAACAAAAAACAAATCAAATGGCACAAAATGACTCCAGGGGTGATA
AAACATAAACATATTAAATTAAGAAAATAGATAATAGAAATTGCTCGAAA
CTAAGTCCTCCGCCCAAGATTCGCAACTGAAGCTACTCATTTTACAGATC
AGCCATGTTGTGGCTTGCTGGCCAAAAAGAAGTACATTGGCGTGAAAATC
TCTTTCCTCCCGCCTGCAGCCAATCCTTCTGCTGCCTTCTCCAGAAAATC
TTGAACCCTTTGACTTCCCTTTGGGGCTAGTCCCACAAATTCTAGGGCTT
TCACCATATTTCTAGTCACAAAACGTCCAACTGATGTTAGGCGGAAGCTA
CTCAGTGAAAAGTGAGATGTATCCC
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