EY665497

Overview
NameEY665497
Unique NameEY665497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665497 vs. ExPASy Swiss-Prot
Match: NHX6_ARATH (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.780e-22
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  180 KEQQAAGVGIILQIMMLVLFFVLGHVLRRHKFYYVPEASASVLIRLIVGALANISNTETPITAMSLLRSHASFGQNFFMVIV 425
            K+QQAAGVGI+LQIMMLVL FVLGHVLRRHKFYY+PEASAS+LI LIVG LANISNTET I      R+  +F   FF + +
Sbjct:   19 KQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGGLANISNTETSI------RTWFNFHDEFFFLFL 94          

HSP 2 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 60/154 (38.96%), Postives = 80/154 (51.95%), Query Frame = 3
Query:  369 MSLLRSHASFGQNFFMVIVTSLDTFVGSMSARAGVGFISALLFKYATLDIEH-----CKKFPDLPNKWNLAPEAV*LPEKERPLKMLQKGNIAATTCQHATKCNYQRFHPPH*TPLLEHIKMYGNSFLFFFRNYTILV*KNTARPLPFIFRSLL 815
            MSL+RSH+S GQNFFMVIV  L+TFVGSMSA  GVGF SA LFKYA LD+++     C  F   P    +  E + L      + +L  G +           N QRF     +     I     +F+F +  + I + K++   L FIF S+L
Sbjct:  204 MSLVRSHSS-GQNFFMVIVRFLETFVGSMSAGVGVGFTSAHLFKYAGLDVDNLQNLECCLFVLFPYFSYMLAEGLSL---SGIVSILFTGIVMKHYTYSNLSANSQRFV----SAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSIL 349          
BLAST of EY665497 vs. ExPASy Swiss-Prot
Match: NHX5_ARATH (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.992e-20
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  180 KEQQAAGVGIILQIMMLVLFFVLGHVLRRHKFYYVPEASASVLIRLIVGALANISNTETPITAMSLLRSHASFGQNFFMVIV 425
            K+QQAAGVGI+LQIMMLVL FVLGHVLRRH+F+Y+PEAS S+LI LIVG LANIS+TET I      R+  +F + FF + +
Sbjct:   14 KQQQAAGVGILLQIMMLVLSFVLGHVLRRHRFHYLPEASGSLLIGLIVGILANISDTETSI------RTWFNFHEEFFFLFL 89          
The following BLAST results are available for this feature:
BLAST of EY665497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NHX6_ARATH2.780e-2269.51Sodium/hydrogen exchanger 6 OS=Arabidopsis thalian... [more]
NHX5_ARATH1.992e-2064.63Sodium/hydrogen exchanger 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-H06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665497 ID=EY665497; Name=EY665497; organism=Citrus sinensis; type=EST; length=818bp
CGGGTACCGGGTCCGGAATTCCGGGGTCACCGCGCGTCCGCCCACGCGTC
CGAGTCCCCCCTTATCAAAGAGAAGAAACGTGACTGATGCTTGGGCTCCC
CCCTTGGGACATCAGGGTATAATGACGGGAGAGCCATTGCAGATATCTCA
GGCGAACGATCCGGCGTGGAAGTCCCGCAAAGGAGCAGCAAGCCGCTGGC
GTTGGCATAATCCTCCAGATTATGATGCTTGTACTCTTTTTCGTCCTCGG
CCACGTCCTTCGCCGTCACAAATTCTATTATGTTCCGGAAGCCAGCGCTT
CTGTTCTCATACGTTTAATTGTTGGTGCACTGGCTAATATCTCTAATACT
GAAACACCTATTACGGCAATGTCCTTACTGAGAAGTCATGCTTCCTTTGG
GCAAAATTTCTTTATGGTGATTGTCACGTCTCTTGATACCTTTGTTGGCT
CAATGTCTGCACGCGCTGGAGTTGGATTTATTTCTGCTTTGCTTTTCAAG
TATGCCACATTGGATATTGAGCACTGCAAAAAATTTCCAGATCTGCCAAA
CAAATGGAACCTCGCCCCGGAGGCTGTGTAACTCCCAGAAAAAGAACGTC
CTTTGAAGATGTTACAAAAGGGCAACATTGCCGCAACAACTTGCCAACAC
GCGACAAAATGCAACTATCAACGATTCCACCCCCCACATTAAACCCCCCT
GTTGGAGCACATAAAAATGTACGGAAATTCGTTCCTCTTTTTTTTCCGAA
ACTATACAATACTTGTGTAAAAAAACACGGCCCGACCCCTCCCCTTTATT
TTCCGCTCCTTACTGCCC
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