CX674315

Overview
NameCX674315
Unique NameCX674315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674315_ssr661 microsatellite CX674315_ssr661:661..676. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11926 contig Csv1_Contig11926:1075..1805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674315 vs. ExPASy Swiss-Prot
Match: GLGB_ORYSJ (1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SBE1 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 6.613e-54
Identity = 97/122 (79.51%), Postives = 110/122 (90.16%), Query Frame = 3
Query:    6 LDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVEESQE 371
            L+++F FL+S+KQIVS  NE+DKVIVFERGDLVFVFNFHP  TY+GYKVGCDLPGKYRVALDSDA  FGG GRVGH++DHFTSPEG+PGV ETNFNNRPNSF+VLSPPRT V YYRV+E +E
Sbjct:  642 LEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDRE 763          
BLAST of CX674315 vs. ExPASy Swiss-Prot
Match: GLGB_SOLTU (1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum GN=SBE1 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.785e-44
Identity = 81/98 (82.65%), Postives = 90/98 (91.84%), Query Frame = 3
Query:    6 LDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNR 299
            LD+KF FLAS KQIVSS ++++KV+VFERGDLVFVFNFHP+NTYEGYKVGCDLPGKYRVALDSDAW FGG GR GH++DHFTSPEGIPGV ETNFN R
Sbjct:  662 LDEKFSFLASGKQIVSSMDDDNKVVVFERGDLVFVFNFHPKNTYEGYKVGCDLPGKYRVALDSDAWEFGGHGRTGHDVDHFTSPEGIPGVPETNFNGR 759          
BLAST of CX674315 vs. ExPASy Swiss-Prot
Match: GLGB_MAIZE (1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic OS=Zea mays GN=SBE1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    6 LDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 359
            L+ K+ F+ S  Q +S  +EEDKVIVFE+GDLVFVFNFH  N+Y  Y++GC  PG Y+V LDSDA  FGG  R+ H  +HFT        A+ + +NRP SF V +P RT VVY  VE
Sbjct:  690 LEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGCRKPGVYKVVLDSDAGLFGGFSRIHHAAEHFT--------ADCSHDNRPYSFSVYTPSRTCVVYAPVE 799          
BLAST of CX674315 vs. ExPASy Swiss-Prot
Match: GLGB_DEBHA (1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii GN=GLC3 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 51/120 (42.50%), Postives = 71/120 (59.17%), Query Frame = 3
Query:    6 LDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRV-------GHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVV 344
            LD K+  L S++  VS  NE DKVIVFER  L+F+FNFHP N+Y  YK+G + PG Y++ L+SD+  FGG GR+       G  +  FT+ E         +N+R N+     P RT++V
Sbjct:  592 LDTKYGILLSSQAYVSLKNENDKVIVFERNGLLFIFNFHPTNSYADYKIGVETPGVYQIVLNSDSLSFGGHGRIEETNKETGEKLQFFTNNE--------RWNDRSNALFCYIPSRTAIV 703          
BLAST of CX674315 vs. ExPASy Swiss-Prot
Match: GLGB_HORSE (1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 3
Query:    3 ELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 359
            +L+++  +L++ +  VS  +E +KVI FER  L+F+FNFHP  +Y  Y+VG  LPGK+++ LDSDA  +GG  R+ HN D F+ P           N RP+S  V  P R +++   V+
Sbjct:  586 KLEERCGWLSAPQAFVSEKHEGNKVIAFERAALLFIFNFHPSKSYTNYRVGTTLPGKFKIVLDSDAAEYGGHQRLDHNTDFFSEP--------YEHNERPSSLLVYIPSRVALILQNVD 696          
BLAST of CX674315 vs. ExPASy Swiss-Prot
Match: GLGB_HUMAN (1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 3
Query:    6 LDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 359
            L++++ +LA+ +  VS  +E +K+I FER  L+F+FNFHP  +Y  Y+VG  LPGK+++ LDSDA  +GG  R+ H+ D F+             N RP S  V  P R +++   V+
Sbjct:  590 LEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSE--------AFEHNGRPYSLLVYIPSRVALILQNVD 699          
BLAST of CX674315 vs. ExPASy Swiss-Prot
Match: GLGB_FELCA (1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 3
Query:    3 ELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 359
            +L+++  +L++ +  VS  +E +K+I FER  LVF+FNFHP  +Y  Y+VG  LPGK+R+ LD+DA  +GG  R+ H+ + F+ P           N RP S  V  P R  ++   V+
Sbjct:  586 KLEERCGWLSAPQAFVSEKHEGNKIIAFERAGLVFIFNFHPSKSYTDYRVGTTLPGKFRIVLDTDAAEYGGHQRLDHSTEFFSQP--------FKHNERPCSLLVYIPNRVGLILQNVD 696          
BLAST of CX674315 vs. ExPASy Swiss-Prot
Match: GLGB_YARLI (1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica GN=GLC3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 3
Query:   12 DKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDH-FTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVEE 362
            D + +L++ +  VS  NE+DKV+V+ER  LVFVFNFHP  ++  Y++G D PG Y + LDSD+  FGG GR+ H      T P          +N R N   +  P R ++V+ R ++
Sbjct:  578 DHYGWLSADQAYVSLKNEDDKVVVYERAGLVFVFNFHPNKSFTDYRIGVDQPGTYTLVLDSDSPEFGGFGRIDHEKTRCHTEP--------LEWNGRANCMHIYIPSRVALVFAREDD 687          
BLAST of CX674315 vs. ExPASy Swiss-Prot
Match: GLGB_CRYNE (1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans GN=GLC3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = 3
Query:    6 LDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVV 344
            L+DK+ +L S +  VS  +E DK+IVFER  L+F+FNFHP  ++  Y+VG D  G+Y+V L SD   FGG  R+     +FT+P          +N R N  +V SP RT +V
Sbjct:  575 LEDKYKWLNSPQAYVSLKHEGDKMIVFERAGLLFIFNFHPTQSFTDYRVGVDTAGEYKVILTSDETRFGGHNRIDMGGRYFTTP--------MEWNGRKNWLQVYSPSRTVLV 679          
BLAST of CX674315 vs. ExPASy Swiss-Prot
Match: GLGB_MOUSE (1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 3
Query:    6 LDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 359
            L+++  +L++ +  VS  +E +K I FER  L+F+FNFHP  +Y  Y+VG   PGK+++ LDSDA  +GG  R+ HN ++F              N RP S  V  P R +++   V+
Sbjct:  590 LEERCGWLSAPQAYVSEKHEANKTITFERAGLLFIFNFHPSKSYTDYRVGTATPGKFKIVLDSDAAEYGGHQRLDHNTNYFAE--------AFEHNGRPYSLLVYIPSRVALILQNVD 699          
The following BLAST results are available for this feature:
BLAST of CX674315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLGB_ORYSJ6.613e-5479.511,4-alpha-glucan-branching enzyme, chloroplastic/a... [more]
GLGB_SOLTU2.785e-4482.651,4-alpha-glucan-branching enzyme OS=Solanum tuber... [more]
GLGB_MAIZE3.093e-2752.541,4-alpha-glucan-branching enzyme 2, chloroplastic... [more]
GLGB_DEBHA4.783e-2042.501,4-alpha-glucan-branching enzyme OS=Debaryomyces ... [more]
GLGB_HORSE8.159e-2039.501,4-alpha-glucan-branching enzyme OS=Equus caballu... [more]
GLGB_HUMAN2.010e-1838.141,4-alpha-glucan-branching enzyme OS=Homo sapiens ... [more]
GLGB_FELCA2.625e-1837.821,4-alpha-glucan-branching enzyme OS=Felis catus G... [more]
GLGB_YARLI9.974e-1838.981,4-alpha-glucan-branching enzyme OS=Yarrowia lipo... [more]
GLGB_CRYNE9.974e-1842.481,4-alpha-glucan-branching enzyme OS=Cryptococcus ... [more]
GLGB_MOUSE6.465e-1736.441,4-alpha-glucan-branching enzyme OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5F11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5F11-K21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674315 ID=CX674315; Name=CX674315; organism=Citrus sinensis; type=EST; length=731bp
ATGAGCTTGATGATAAGTTTCCATTCCTTGCATCGACAAAGCAGATTGTG
AGCAGTACAAATGAAGAAGATAAGGTTATCGTTTTTGAGCGTGGAGATCT
TGTTTTTGTCTTCAATTTTCATCCAGAAAACACATATGAAGGGTATAAAG
TTGGGTGCGACTTGCCAGGGAAGTACAGAGTTGCTCTGGATAGTGATGCT
TGGGGATTCGGAGGAGATGGAAGAGTAGGGCATAACATAGATCATTTCAC
ATCTCCAGAAGGGATACCAGGAGTTGCAGAAACAAATTTCAACAACCGTC
CCAACTCATTCAGAGTACTATCGCCACCTCGCACGAGTGTGGTTTACTAT
AGAGTAGAAGAAAGCCAAGAAGGGCACAACAATAGTGAGCCAGTGAATGT
TCAAGGAAAATTAGCAGCAGATGTTCCAGCTGAGCTGGAAAGTCCTGAAT
CATCAGCCACCCTGGCAGCAGATGATGTTGATGATGTTACTGCAAGAAAG
ATTGAAGATCAGAAGCAAAATAGAATCGTGGGAGGGGAGTCCAATGTTTA
ATATGCAAAACTCAGCTGTTCATAGGACAGCTCTGTGAAATAATAGGGAA
TTTATCACTGAATCCTCTATGGGTTGTAAATTCTGATATCTGCATTTGAA
ATCATTCTCTTGTGTGTGTGTGTGTGTACATACATATAGGGTGTAAAAGC
GAATCCGGTTGTGCTTAAAAAAAAAAAAAAA
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