EY665495

Overview
NameEY665495
Unique NameEY665495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665495_ssr49 microsatellite EY665495_ssr49:49..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665495 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.986e-57
Identity = 109/141 (77.30%), Postives = 118/141 (83.69%), Query Frame = 3
Query:   69 METAKNVKDVSPHEFVKADAAHLKRSGKIELPTWNDIVETGTLKELAPYDPDWYYITAASMARKIYFRGGLGVGSFRTIYGGGKRNGSCPPHFSKSSGSVARHILHQLLKGKIIELVSNGAKIITSSGHRDLDQVAGRIAV 491
            M T K VKDVSPH+FVKA A+HLKRSGKIELPTW DIV+TG LKELAPYDPDWYYI AASMARK+Y RGGLGVG+FR IYGG KRNGS PPHF KSSG +ARHIL QL    I+EL + G + ITSSG RDLDQVAGRIAV
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAV 141          
BLAST of EY665495 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.594e-57
Identity = 110/142 (77.46%), Postives = 117/142 (82.39%), Query Frame = 3
Query:   69 METAKNVKDVSPHEFVKADAAHLKRSGKIELPTWNDIVETGTLKELAPYDPDWYYITAASMARKIYFRGGLGVGSFRTIYGGGKRNGSCPPHFSKSSGSVARHILHQLLKGKIIELVSNGAKIITSSGHRDLDQVAGRIAVA 494
            M T K VKDVSPHEFVKA AAHLKRSGKIELP W DIV+TG LKELAPYDPDWYYI AASMARK+Y RGGLGVG+FR IYGG KRNGS PPHF KSSG VARHIL QL    I++L + G + ITSSG RDLDQVAGRIA A
Sbjct:    1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIAAA 142          
BLAST of EY665495 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.196e-56
Identity = 108/140 (77.14%), Postives = 116/140 (82.86%), Query Frame = 3
Query:   69 METAKNVKDVSPHEFVKADAAHLKRSGKIELPTWNDIVETGTLKELAPYDPDWYYITAASMARKIYFRGGLGVGSFRTIYGGGKRNGSCPPHFSKSSGSVARHILHQLLKGKIIELVSNGAKIITSSGHRDLDQVAGRIA 488
            M T K VKDVSPH+FVKA A+HLKRSGKIELP W DIV+TG LKELAPYDPDWYYI AASMARKIY RGGLGVG+FR IYGG KRNGS PPHF KSSG +ARHIL QL    I+EL + G + ITSSG RDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRIA 140          
BLAST of EY665495 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.290e-48
Identity = 93/139 (66.91%), Postives = 111/139 (79.86%), Query Frame = 3
Query:   75 TAKNVKDVSPHEFVKADAAHLKRSGKIELPTWNDIVETGTLKELAPYDPDWYYITAASMARKIYFRGGLGVGSFRTIYGGGKRNGSCPPHFSKSSGSVARHILHQLLKGKIIELVSNGAKIITSSGHRDLDQVAGRIAV 491
            TA+ VKDV+PHEFVKA +AHLKRSGK+ELP W DIV+T   KEL PYDPDWYY  AAS+ARKIY R G+GVG F+ IYGG +RNGS PPHF KSSG+++R+IL QL K  II++   G ++ITS G RDLDQVAGR+ V
Sbjct:    5 TARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143          
BLAST of EY665495 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.847e-38
Identity = 72/135 (53.33%), Postives = 98/135 (72.59%), Query Frame = 3
Query:   84 NVKDVSPHEFVKADAAHLKRSGKIELPTWNDIVETGTLKELAPYDPDWYYITAASMARKIYFRGGLGVGSFRTIYGGGKRNGSCPPHFSKSSGSVARHILHQLLKGKIIELVSNGAKIITSSGHRDLDQVAGRIA 488
            +VKDVS HEF +A AA LK+SGK+++P W D V+TG  KEL+PY+PDWY+I AAS+ R +Y R   G+GSF  IYGG +R G+ P HF K++GS++R +L  L   KI+E   NG + +TS G RDLD++A +IA
Sbjct:    4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGRRDLDRIAAQIA 138          
BLAST of EY665495 vs. ExPASy Swiss-Prot
Match: RS19_ICTPU (40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.645e-35
Identity = 74/137 (54.01%), Postives = 96/137 (70.07%), Query Frame = 3
Query:   87 VKDVSPHEFVKADAAHLKRSGKIELPTWNDIVETGTLKELAPYDPDWYYITAASMARKIYFRGGLGVGSFRTIYGGGKRNGSCPPHFSKSSGSVARHILHQLLKGKIIELVSNGAKIITSSGHRDLDQVAGRIAVAA 497
            VKDV+  EFV+A AA LK+SGK+++P W DIV+    KELAP D +W+YI AAS  R +Y RGG+GVGS   IYGG KRNG CP HFS  S +VAR +L  L   K++E   NG + +T  G RDLD++AG++A A+
Sbjct:    8 VKDVNQQEFVRALAAFLKKSGKLKVPDWVDIVKLAKHKELAPCDDNWFYIRAASTVRHLYLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQALEALKMVEKDPNGGRRLTPQGTRDLDRIAGQVAAAS 144          
BLAST of EY665495 vs. ExPASy Swiss-Prot
Match: RS19_GILMI (40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.760e-35
Identity = 72/137 (52.55%), Postives = 98/137 (71.53%), Query Frame = 3
Query:   87 VKDVSPHEFVKADAAHLKRSGKIELPTWNDIVETGTLKELAPYDPDWYYITAASMARKIYFRGGLGVGSFRTIYGGGKRNGSCPPHFSKSSGSVARHILHQLLKGKIIELVSNGAKIITSSGHRDLDQVAGRIAVAA 497
            VKDV+  EFV+A AA LK+SGK+++P W D+V+ G  KELAP D +W+YI AAS  R +Y RGG GVGS   IYGG +RNG CP H+S+ S +VAR +L  L   K+IE   NG + +T+ G RDLD++AG+++ A+
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHLYLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLDRIAGQVSAAS 142          
BLAST of EY665495 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.120e-35
Identity = 71/135 (52.59%), Postives = 96/135 (71.11%), Query Frame = 3
Query:   87 VKDVSPHEFVKADAAHLKRSGKIELPTWNDIVETGTLKELAPYDPDWYYITAASMARKIYFRGGLGVGSFRTIYGGGKRNGSCPPHFSKSSGSVARHILHQLLKGKIIELVSNGAKIITSSGHRDLDQVAGRIAV 491
            VKDV+  EFVKA AA  K+SGK++ P W D V+ G  KELAP+D DWYYI  AS+AR +Y RGG+GVG+   IYGG +RNG+ P H+S+ S +VAR +L  L   K++E   NG + +TS G RD+D++AG++ V
Sbjct:    6 VKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQVVV 140          
BLAST of EY665495 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.120e-35
Identity = 73/136 (53.68%), Postives = 96/136 (70.59%), Query Frame = 3
Query:   87 VKDVSPHEFVKADAAHLKRSGKIELPTWNDIVETGTLKELAPYDPDWYYITAASMARKIYFRGGLGVGSFRTIYGGGKRNGSCPPHFSKSSGSVARHILHQLLKGKIIELVSNGAKIITSSGHRDLDQVAGRIAVA 494
            VKDV+  EFVKA AA LK+SGK++LP W D+V+T   KELAPYDPDW+Y+ AAS AR +Y RGG+GVG+   IYGG KR G+ P  F   S  V+R +L  L   K++E  + G + +TS G RDLD++AG++A A
Sbjct:    7 VKDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLTSQGQRDLDRIAGQVATA 142          
BLAST of EY665495 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.363e-34
Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 3
Query:   87 VKDVSPHEFVKADAAHLKRSGKIELPTWNDIVETGTLKELAPYDPDWYYITAASMARKIYFRGGLGVGSFRTIYGGGKRNGSCPPHFSKSSGSVARHILHQLLKGKIIELVSNGAKIITSSGHRDLDQVAGRIAVA 494
            VKDV+  EFV+A AA LK+SGK+++P W D V+    KELAPYD +W+Y  AAS AR +Y RGG GVGS   IYGG +RNG  P HFS+ S SVAR +L  L   K++E   +G + +T  G RDLD++AG++A A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141          
The following BLAST results are available for this feature:
BLAST of EY665495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS191_ARATH1.986e-5777.3040S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS193_ARATH2.594e-5777.4640S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS192_ARATH2.196e-5677.1440S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_ORYSJ1.290e-4866.9140S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
RS19_MYAAR7.847e-3853.3340S ribosomal protein S19 OS=Mya arenaria GN=RPS19... [more]
RS19_ICTPU3.645e-3554.0140S ribosomal protein S19 OS=Ictalurus punctatus G... [more]
RS19_GILMI4.760e-3552.5540S ribosomal protein S19 OS=Gillichthys mirabilis... [more]
RS19_MYXGL8.120e-3552.5940S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS19_BRABE8.120e-3553.6840S ribosomal protein S19 OS=Branchiostoma belcher... [more]
RS19_PONAB2.363e-3452.9440S ribosomal protein S19 OS=Pongo abelii GN=RPS19... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-H03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665495 ID=EY665495; Name=EY665495; organism=Citrus sinensis; type=EST; length=806bp
ACAGTACATAGCACATGCCCCTTTTGCTCCGCCGCTGAAGCACAGACTGA
GAGAGAGACACATATAGAATGGAGACTGCAAAAAATGTGAAGGACGTCTC
TCCCCACGAGTTCGTCAAGGCCGACGCCGCCCATCTCAAACGCTCCGGCA
AGATTGAGCTTCCTACTTGGAACGACATCGTCGAGACTGGAACGTTGAAG
GAGCTAGCCCCTTATGACCCCGATTGGTACTATATCACGGCTGCTTCAAT
GGCGAGGAAGATCTACTTTAGGGGTGGTCTTGGTGTTGGTTCCTTCCGTA
CAATCTATGGAGGGGGGAAGAGGAACGGTAGCTGCCCACCTCATTTCAGC
AAGAGCAGTGGCTCTGTTGCTCGTCACATACTTCACCAATTGCTGAAGGG
GAAGATCATCGAACTTGTTTCTAACGGCGCGAAGATAATCACATCCAGTG
GGCATCGGGATCTTGATCAAGTTGCTGGAAGGATTGCAGTTGCTGCCCCT
TGAGGGATTACCTCAAGCTTTTCAAAAGATTGATGTTATTGAGATAATTT
GTTTGAATGGGGACTACTAGATACAAAGCATCCTTAGTTGATTTTCCCTT
CTCCTGTTGTAACCTAAAATAAATTATAATAAAAATCCTTTACAAAATAA
AAAAAAAAAAAAAAAAAAACGGGGCCCGACTCTAAAAATCCAATTTATCA
AACCAGGGTGCCACGACCAAAGCTCTTAATATCATGACACCAAAAATCAA
ACACCCGGCACTCATTTACAAAACCCTAGCTGGGAAAACCGTGGCTGTTC
CCAACT
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