EY665462

Overview
NameEY665462
Unique NameEY665462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10456 contig Csv1_Contig10456:356..1126. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY665462 vs. ExPASy Swiss-Prot
Match: GILT_HUMAN (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 51/134 (38.06%), Postives = 69/134 (51.49%), Query Frame = 3 
Query:   57 FDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLE--LDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVEGQPLYEDYENFISYVCKAYKG---NVVPKACSNL 443
            F CQHG  EC  N VEAC +D   ++   F  I C+E   +E        C       L P  I++C     G QL    A  T++L PPH+YVPWV V G+PL ED    ++ VC+ Y+G   +V P + S+L
Sbjct:  126 FKCQHGEEECKFNKVEACVLDEL-DMELAFLTIVCMEE--FEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQGKKPDVCPSSTSSL 255
[Close]
BLAST of EY665462 vs. ExPASy Swiss-Prot
Match: YVRI_CAEEL (GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 50/154 (32.47%), Postives = 82/154 (53.25%), Query Frame = 3 
Query:    3 ISIFLPPL-NAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSQ-WETCFDKLELD---PKPIVDCYTSGYGTQLELKYAAETNSLVP-PHQYVPWVVVEGQPL--YEDYENFI-SYVCKAYKGNVVPKAC 434
            ++I L P  NAK+   + T  CQHG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL++     +    C  S  G  L+ K AA T ++ P  H++VPWV++ G  L  ++ ++N + + +C+ Y G+     C
Sbjct:  109 VNIELVPFGNAKV-LEDGTIKCQHGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTSFQGFQNQLPTLLCEWYSGDKAIPYC 260
The following BLAST results are available for this feature:
BLAST of EY665462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GILT_HUMAN3.517e-1638.06Gamma-interferon-inducible lysosomal thiol reducta... [more]
YVRI_CAEEL1.529e-1132.47GILT-like protein F37H8.5 OS=Caenorhabditis elegan... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665462 ID=EY665462; Name=EY665462; organism=Citrus sinensis; type=EST; length=774bp
TGATCTCCATCTTTCTCCCTCCTTTGAACGCCAAAATCAGAGCCAACAAC
AGCACCTTTGATTGCCAGCATGGCCCTTCTGAATGCTTGCTGAACACTGT
GGAAGCTTGTGCGATTGATAGTTGGCCTGAATTGAACAAGCATTTCCCGT
TTATCTACTGCATTGAGAGTTTAGTGTACGAGCATAAGTATTCTCAGTGG
GAAACATGCTTTGATAAATTGGAACTGGATCCGAAACCAATTGTTGATTG
CTATACCAGTGGATATGGAACACAGCTTGAGTTAAAATATGCAGCTGAGA
CAAATTCCCTTGTGCCTCCTCATCAATATGTGCCTTGGGTTGTTGTGGAA
GGACAGCCACTGTATGAGGACTACGAAAATTTTATAAGCTATGTCTGCAA
GGCTTATAAAGGCAATGTCGTGCCTAAGGCTTGCAGCAACCTATTCCTCA
TCACGAACTACTATGGAGTCGAACAAAAGCCTGTCTTTCCAGTTGGCTAT
AATAAGTAGATAACAACATTACCCACAAGAATTAAATCAGCCATAACAAT
GTGGATACGCAAGATGAGCATGGTAACTTCATTGTAGATGCCTCGTACTT
CCATATGCTCTTTTCCAATGTGTTTGTGACTGTTAATGAGTCCCCCATAA
GGTGCTGATGACTTGATCACAGGTTGTTAGTTGTTGGCTAAAATGGGAAG
TTTTTATTTATTGACTTTAAAATTATGATATTGGCTGGAAAGCTAATTGG
CTTTTGCATAAAAAAAAAAAAAAA
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