EY665434

Overview
NameEY665434
Unique NameEY665434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1039
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665434_ssr28 microsatellite EY665434_ssr28:28..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665434 vs. ExPASy Swiss-Prot
Match: C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 117/167 (70.06%), Postives = 126/167 (75.45%), Query Frame = 1
Query:   10 QNDTQRXXXXXXLMLNED-MHKF-GRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVEKGKFSPWGNPNWA*FKRPF*TFNMGAEM 504
            QN++QR      LML  D  HKF GR RLER DF     A ++NP SRQIYLTFPADSTFREEDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVK+ILAKGNPHF+CDARVLVKPYKEKGKVPDKYRKQ Q  E+  FS    P     + PF    +GA M
Sbjct:  319 QNESQRAAAAAALMLGGDEAHKFMGRPRLERADF-----ASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQHQPGERVDFSSCTTPTGLDARDPFDMHQLGARM 480          
BLAST of EY665434 vs. ExPASy Swiss-Prot
Match: C3H22_ORYSJ (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 3.950e-54
Identity = 114/167 (68.26%), Postives = 124/167 (74.25%), Query Frame = 1
Query:   13 NDTQRXXXXXXLML--NEDMHKF-GRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVEKGKFSPWGNPNWA*FKRPF*TFNMGAEM 504
            ND QR      LML  +++ HKF GR RL+R DF     A ++NP SRQIYLTFPADSTFREEDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVK+ILAKGNPHF+CDARVLVKPYKEKGKVPDKYRK Q     G FS    P     + PF    +GA M
Sbjct:  324 NDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDF-----ASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQ-----GDFSGCTTPTGLDGRDPFDLHQLGARM 480          
BLAST of EY665434 vs. ExPASy Swiss-Prot
Match: C3H23_ORYSJ (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica GN=Os03g0329200 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.271e-52
Identity = 113/166 (68.07%), Postives = 123/166 (74.10%), Query Frame = 1
Query:   13 NDTQRXXXXXXLMLNED-MHKF-GRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVEKGKFSPWGNPNWA*FKRPF*TFNMGAEM 504
            ND QR      ++   D  HKF GR RL+R DF     A ++NP SRQIYLTFPADSTFREEDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVK+ILAKGNPHF+CDARVLVKPYKEKGKVPDKYRKQQQ    G F    +P     + PF    +GA M
Sbjct:  318 NDNQRAAAAALMLAGGDEAHKFMGRPRLDRVDF-----ASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQ----GDFCCM-SPTGLDARDPFDFHQLGARM 473          
BLAST of EY665434 vs. ExPASy Swiss-Prot
Match: C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.454e-48
Identity = 102/145 (70.34%), Postives = 111/145 (76.55%), Query Frame = 1
Query:   10 QNDTQRXXXXXXLMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVEKGKFSPWG 444
            QND QR      LM+ +++ K GR R ER D S      +  PASRQIYLTFPADS FREEDVSNYFS +GPVQDVRIPYQQKRMFGFVTFVYPETVK ILAKGNPHFVCD+RVLVKPYKEKGKVPDKYR    Q  + + SP G
Sbjct:  220 QNDVQRAAAA--LMIGDELQKLGRWRPERIDLS-----AMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYR--TNQTTERELSPTG 355          
BLAST of EY665434 vs. ExPASy Swiss-Prot
Match: C3H55_ARATH (Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana GN=At5g12440 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.408e-43
Identity = 93/158 (58.86%), Postives = 121/158 (76.58%), Query Frame = 1
Query:   85 RLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQ--QQQVEKGKFSPWGNPNWA*FKRPF*TFNMGAEMFL**YSRTCR*RRKME 552
            RLER + +++      N ASRQIYLTFPADSTF++EDV+ YFS++G VQDVRIPYQQKRMFGFV+F +PETVK++LA+GNPHF+CD+RVLVKPYKEKGKV DK ++Q  QQQ+E+G +SP  +P+     R    F++G++M    Y R    RRK+E
Sbjct:  240 RLERMELAMH-LGDQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERGNYSPCSSPSGI-DPREQSDFHLGSKML---YERREMMRRKIE 392          
BLAST of EY665434 vs. ExPASy Swiss-Prot
Match: C3H18_ARATH (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.785e-30
Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   46 LMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGK 381
            ++L ED  KF     ERN+       G +   SRQIYLTFPA+S+F E DVS YF+ YG V+DVRIP QQKRM+GFVTF   ETVK ILAKGNPHF+C+ARVLVKPY+EK +
Sbjct:  290 VILAEDASKFVEYTGERNEH------GAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR 395          
BLAST of EY665434 vs. ExPASy Swiss-Prot
Match: C3H54_ORYSJ (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica GN=Os08g0126700 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.578e-29
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 1
Query:  115 GSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDK 393
            G  G V  +S QIYLTFPA+STF E+DV+NYF  YGPV+DVRIP Q++RMFGFV+F  PETV  IL + NPHF+C +RVLVKPY+EK K  D+
Sbjct:  412 GDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDR 504          
BLAST of EY665434 vs. ExPASy Swiss-Prot
Match: C3H51_ORYSJ (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica GN=Os07g0583300 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.259e-24
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  142 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 384
            S QIY+TFP  S F ++DV NYF  +GPV  VRIPYQ+KRMFGFV+F+Y ETV++IL+KG  HF+C  RVLVK Y EK ++
Sbjct:  324 SNQIYMTFPVHSKFTDDDVENYFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404          
The following BLAST results are available for this feature:
BLAST of EY665434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
C3H53_ORYSJ8.502e-5770.06Zinc finger CCCH domain-containing protein 53 OS=O... [more]
C3H22_ORYSJ3.950e-5468.26Zinc finger CCCH domain-containing protein 22 OS=O... [more]
C3H23_ORYSJ1.271e-5268.07Zinc finger CCCH domain-containing protein 23 OS=O... [more]
C3H46_ARATH1.454e-4870.34Zinc finger CCCH domain-containing protein 46 OS=A... [more]
C3H55_ARATH1.408e-4358.86Zinc finger CCCH domain-containing protein 55 OS=A... [more]
C3H18_ARATH1.785e-3061.61Zinc finger CCCH domain-containing protein 18 OS=A... [more]
C3H54_ORYSJ2.578e-2964.52Zinc finger CCCH domain-containing protein 54 OS=O... [more]
C3H51_ORYSJ4.259e-2461.73Putative zinc finger CCCH domain-containing protei... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665434 ID=EY665434; Name=EY665434; organism=Citrus sinensis; type=EST; length=1039bp
CCAGCAGCACAAAATGATACTCAGAGGGCTGCTGCTGCTGCTGCTTTGAT
GCTGAATGAGGATATGCACAAGTTTGGCCGATCTAGGCTTGAAAGAAACG
ATTTTTCGATCAACGGCAGTGCCGGAATTGTGAATCCAGCCTCAAGGCAA
ATCTACTTGACTTTCCCAGCTGATAGCACCTTCAGAGAAGAAGATGTTTC
AAATTACTTCAGTATCTATGGACCTGTGCAAGATGTGAGGATTCCATATC
AGCAGAAGAGGATGTTTGGATTTGTCACTTTTGTCTATCCAGAAACTGTG
AAGATTATTTTAGCCAAAGGAAATCCCCATTTTGTTTGTGATGCAAGAGT
GCTTGTTAAGCCTTACAAGGAGAAAGGAAAAGTTCCAGACAAGTACAGGA
AGCAACAGCAACAAGTTGAAAAAGGAAAGTTTTCTCCTTGGGGAAACCCC
AACTGGGCTTGATTCAAGAGACCCTTTTGAACCTTCAACATGGGGGCAGA
AATGTTCCTATAATAATACTCAAGGACTTGCCGGTGAAGAAGGAAAATGG
AAGGAACAAGCTGAATTTGCAGCCAGCCCCCCCGACCTTCAAAAGTAAAA
AAATAATGGGGGGCCTCACACCTTTCTTGGAATGTTAAAAAAACCATCAT
TCATCCCCGGGGGCTTCTTTTTCAACGGGCAAGCCCCAATTTCCCTTCCC
CCCCCCCCCCACCTCCCCAAAAATATTTTTCCCCTCCAAAAAATCTGGGG
CCTTTTCCCCCCCCCCTTTCCCAAAAAAAAACGGGGGGAAAAAAACCCTT
TCCCCCCAAAAAAAAAAGGGGTTTCCAAAAACCCTTTTTGCCCCCCCCAA
TTTTTTTCTTGGGGCCCCCCGGGGGGGGGTGGAAAAAAAAAAAACAGGTG
TGTGTGGAAAAGATGGGGCGGGCAGGGAGGAATATTTCCCCCCACCCCGC
CTGGTGTTGGAAAAAAAAAAAAAAAAAAAAATTATCAAAAAAAAATAAAA
GAAGAAGGGGAGAATAACACCCCCCCCCCCCCTCCCCCC
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