EY717692

Overview
NameEY717692
Unique NameEY717692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY717692 vs. ExPASy Swiss-Prot
Match: NU3C_CITSI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Citrus sinensis GN=ndhC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.616e-14
Identity = 44/78 (56.41%), Postives = 46/78 (58.97%), Query Frame = 3
Query:  657 QYDIFWAFLIISSVIPILAFLISAVLAPINKGAEKLSRYGIGIRTNGRCLVTISNPGLYVXXXXXXXXXXXXXLYPWA 890
            +YDIFWAFLIISSVIPILAFLISAVLAPINKG EKLS Y  GI   G   +                      LYPWA
Sbjct:    6 KYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWA 83          
BLAST of EY717692 vs. ExPASy Swiss-Prot
Match: NU3C_RANMC (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Ranunculus macranthus GN=ndhC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.233e-13
Identity = 42/78 (53.85%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  657 QYDIFWAFLIISSVIPILAFLISAVLAPINKGAEKLSRYGIGIRTNGRCLVTISNPGLYVXXXXXXXXXXXXXLYPWA 890
            +YDIFWAFLIISSVIPILAFLIS VLAPIN+G EKLS Y  GI   G   +                      LYPWA
Sbjct:    6 EYDIFWAFLIISSVIPILAFLISGVLAPINEGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWA 83          
BLAST of EY717692 vs. ExPASy Swiss-Prot
Match: NU3C_CARPA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Carica papaya GN=ndhC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.233e-13
Identity = 42/78 (53.85%), Postives = 44/78 (56.41%), Query Frame = 3
Query:  657 QYDIFWAFLIISSVIPILAFLISAVLAPINKGAEKLSRYGIGIRTNGRCLVTISNPGLYVXXXXXXXXXXXXXLYPWA 890
            +YDIFWAFLIISS IPILAFLIS VLAPINKG EKLS Y  GI   G   +                      LYPWA
Sbjct:    6 EYDIFWAFLIISSAIPILAFLISGVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWA 83          
BLAST of EY717692 vs. ExPASy Swiss-Prot
Match: NU3C_PIPCE (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Piper cenocladum GN=ndhC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.141e-13
Identity = 42/78 (53.85%), Postives = 44/78 (56.41%), Query Frame = 3
Query:  657 QYDIFWAFLIISSVIPILAFLISAVLAPINKGAEKLSRYGIGIRTNGRCLVTISNPGLYVXXXXXXXXXXXXXLYPWA 890
            +YDIFW FLIISSVIPILAFLIS VLAPIN+G EKLS Y  GI   G   V                      LYPWA
Sbjct:    6 EYDIFWTFLIISSVIPILAFLISGVLAPINEGPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWA 83          
BLAST of EY717692 vs. ExPASy Swiss-Prot
Match: NU3C_BUXMI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Buxus microphylla GN=ndhC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.141e-13
Identity = 42/78 (53.85%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  657 QYDIFWAFLIISSVIPILAFLISAVLAPINKGAEKLSRYGIGIRTNGRCLVTISNPGLYVXXXXXXXXXXXXXLYPWA 890
            +YDIFWAFLIISSVIPILAFLIS VLAPI+KG EKLS Y  GI   G   +                      LYPWA
Sbjct:    6 EYDIFWAFLIISSVIPILAFLISGVLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWA 83          
BLAST of EY717692 vs. ExPASy Swiss-Prot
Match: NU3C_DAUCA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Daucus carota GN=ndhC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.063e-12
Identity = 40/78 (51.28%), Postives = 44/78 (56.41%), Query Frame = 3
Query:  657 QYDIFWAFLIISSVIPILAFLISAVLAPINKGAEKLSRYGIGIRTNGRCLVTISNPGLYVXXXXXXXXXXXXXLYPWA 890
            +YDIFWAFLIISS+IPILAF +S VLAPINKG EKLS Y  GI   G   +                      LYPWA
Sbjct:    6 EYDIFWAFLIISSLIPILAFFVSGVLAPINKGPEKLSSYESGIEPMGNAWLQFRIRYYMFALVFVVFDVETVFLYPWA 83          
BLAST of EY717692 vs. ExPASy Swiss-Prot
Match: NU3C_CHLSC (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Chloranthus spicatus GN=ndhC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.063e-12
Identity = 41/78 (52.56%), Postives = 44/78 (56.41%), Query Frame = 3
Query:  657 QYDIFWAFLIISSVIPILAFLISAVLAPINKGAEKLSRYGIGIRTNGRCLVTISNPGLYVXXXXXXXXXXXXXLYPWA 890
            +YDIFWAFLIISSVIPIL FLIS VLAPIN+G EKLS Y  GI   G   +                      LYPWA
Sbjct:    6 EYDIFWAFLIISSVIPILVFLISGVLAPINEGPEKLSSYESGIEPMGNAWLQFRIRYYMFALVFVVFDVETVFLYPWA 83          
BLAST of EY717692 vs. ExPASy Swiss-Prot
Match: NU3C_VITVI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Vitis vinifera GN=ndhC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.369e-12
Identity = 41/78 (52.56%), Postives = 44/78 (56.41%), Query Frame = 3
Query:  657 QYDIFWAFLIISSVIPILAFLISAVLAPINKGAEKLSRYGIGIRTNGRCLVTISNPGLYVXXXXXXXXXXXXXLYPWA 890
            +YDIFWAFLIISSVIPILAF IS VLAPI+KG EKLS Y  GI   G   +                      LYPWA
Sbjct:    6 EYDIFWAFLIISSVIPILAFFISGVLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWA 83          
BLAST of EY717692 vs. ExPASy Swiss-Prot
Match: NU3C_PLAOC (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Platanus occidentalis GN=ndhC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.369e-12
Identity = 41/78 (52.56%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  657 QYDIFWAFLIISSVIPILAFLISAVLAPINKGAEKLSRYGIGIRTNGRCLVTISNPGLYVXXXXXXXXXXXXXLYPWA 890
            +YDIFWAFLIISSVIPILAFLIS VLAPI++G EKLS Y  GI   G   +                      LYPWA
Sbjct:    6 EYDIFWAFLIISSVIPILAFLISGVLAPISEGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWA 83          
BLAST of EY717692 vs. ExPASy Swiss-Prot
Match: NU3C_NANDO (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nandina domestica GN=ndhC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.369e-12
Identity = 41/78 (52.56%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  657 QYDIFWAFLIISSVIPILAFLISAVLAPINKGAEKLSRYGIGIRTNGRCLVTISNPGLYVXXXXXXXXXXXXXLYPWA 890
            +YDIFWAFLIISSVIPILAFLIS VLAPI++G EKLS Y  GI   G   +                      LYPWA
Sbjct:    6 EYDIFWAFLIISSVIPILAFLISGVLAPISEGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWA 83          
The following BLAST results are available for this feature:
BLAST of EY717692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
NU3C_CITSI9.616e-1456.41NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_RANMC6.233e-1353.85NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CARPA6.233e-1353.85NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_PIPCE8.141e-1353.85NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_BUXMI8.141e-1353.85NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_DAUCA1.063e-1251.28NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CHLSC1.063e-1252.56NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_VITVI2.369e-1252.56NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_PLAOC2.369e-1252.56NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_NANDO2.369e-1252.56NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-082-D06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY717692 ID=EY717692; Name=EY717692; organism=Citrus sinensis; type=EST; length=913bp
CCACGCGTCCGATGGATTTGCCTCTTTTCCTGTTCCCATCACAATCAAAG
AGTTATTGATACTTCCTTTCTTTGGTATACTCACCTACTTTTGGTGAATT
TGCGGAGTCAAAATCATGACACGAATCCGGGGAGACGCCGACGTAACCCA
ACTCAAATGGAATAGTAAGTCGCATGGATATAGGAACGGATTACGGTATT
TGTTGACACCTCAGCGTTTGAAAAACGAATAGCTTTTCATAAACATAATT
CAGAAACAGAAAATATTCTATATATTGAGAATAGAATCAAAATCGATTGA
ATTTCGAAGATTCGAATTCGAAATTCGAAACAAAAATTCGAATTTTCTTT
TGACTTCCTTTGATTTAGACAAGTCCGAAGCGCGGTGAACGCAAAAGGGT
TTTGTTTGTTTTGTTTGTATAAGAGATTTATACTATATTGAAATAAAATC
GAAGGAAGTGTAATGAAAATAGGATTCCAATCGATAAATCTTAAAACGAG
ACATCACAACAAACAAACGAAACTTTGCGGTTCGATCAAAATGAATTGTT
GTTTTGATTAACCAATTATCGATGACTTGACAATGAATTCCAATTTGCAT
CGACAAATTTGGTCTATTTTCCACATTCATAGGAGTTTGGCTATGTTTCT
GCTTTACAATATGATATTTTCTGGGCATTTCTAATAATATCAAGCGTTAT
TCCTATTTTGGCATTTCTAATTTCCGCAGTTTTAGCCCCGATTAACAAAG
GGGCAGAGAAACTTTCTAGGTATGGAATCGGTATCCGAACCAATGGGCGA
TGCTTGGTTACCATTTCGAATCCGGGATTATATGTTTGCTCCAGTTTTTG
TGGTTTTTGAAGTGGAAACGGTTTTCTTTATCCTTGGGCATGATTTTTGA
GGATTGGGGGTAC
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