CV885691

Overview
NameCV885691
Unique NameCV885691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885691 vs. ExPASy Swiss-Prot
Match: IMB1_MOUSE (Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.089e-46
Identity = 105/231 (45.45%), Postives = 141/231 (61.04%), Query Frame = 2
Query:   14 IMGRLGQTLELQ--IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXXXXXXXXRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFK 694
            IM RL Q L+++  I S+ DR +  DLQ+ LC  LQ +++K    DA     LQ +D +M   LR+F     S  V E+A++A+  L    G EF KYM  F  +L +GL+N  EYQVC   VG+VGD+CRAL   +LPFCD +M             RSVKP ILS FGDIALAIG  F+KY+   L  +Q+A++  AQ+D  D +++DY N+LR S  EAY+GI+QG K
Sbjct:  554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ--AQVDKSDFDMVDYLNELRESCLEAYTGIVQGLK 777          
BLAST of CV885691 vs. ExPASy Swiss-Prot
Match: IMB1_HUMAN (Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.952e-46
Identity = 104/231 (45.02%), Postives = 141/231 (61.04%), Query Frame = 2
Query:   14 IMGRLGQTLELQ--IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXXXXXXXXRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFK 694
            IM RL Q L+++  I S+ DR +  DLQ+ LC  LQ +++K    DA     LQ +D +M   LR+F     S  V E+A++A+  L    G EF KYM  F  +L +GL+N  EYQVC   VG+VGD+CRAL   ++PFCD +M             RSVKP ILS FGDIALAIG  F+KY+   L  +Q+A++  AQ+D  D +++DY N+LR S  EAY+GI+QG K
Sbjct:  554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ--AQVDKSDYDMVDYLNELRESCLEAYTGIVQGLK 777          
BLAST of CV885691 vs. ExPASy Swiss-Prot
Match: IMB1_RAT (Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.363e-44
Identity = 103/231 (44.59%), Postives = 138/231 (59.74%), Query Frame = 2
Query:   14 IMGRLGQTLELQ--IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXXXXXXXXRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFK 694
            IM RL Q L+++  I S+ DR +  DLQ+ LC  LQ ++ K    DA     LQ +D +M   LR+F     S  V E+A++A+  L    G EF KYM  F  +L +GL+N  E QVC   VG+VGD+CRAL   +LPFCD +M             RSVKP ILS FGDI LAIG  F+KY+   L  +Q+A++  AQ+D  D +++DY N+LR S  EAY+GI+QG K
Sbjct:  553 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLWKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAECQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDITLAIGGEFKKYLEVVLNTLQQASQ--AQVDKSDFDMVDYLNELRESCLEAYTGIVQGLK 776          
BLAST of CV885691 vs. ExPASy Swiss-Prot
Match: IMB_DROME (Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.647e-41
Identity = 98/232 (42.24%), Postives = 136/232 (58.62%), Query Frame = 2
Query:   14 IMGRLGQTLEL--QIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF---ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXXXXXXXXRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFK 694
            I+ RL Q +++  QI +  DR +  DLQ+ LC  LQ +++K    DA      Q +D IM   L +F   A +S  V EEA LA+  L    G +FAKYMP F  +L MGL+N +EYQVC   VG+ GD+ RAL D ++P+ + IM             R+VKP +LS FGDIAL+IG HF  Y+   L M++ A+    Q D  + ++ +Y N+LR SI EAY+GI+QG K
Sbjct:  559 ILERLNQVMQMETQINNHSDRHQFNDLQSLLCATLQSVLRKVHEQDAP-----QISDAIMTALLTMFNSSAGKSGVVQEEAFLAVSTLVELLGAQFAKYMPAFKDFLVMGLKNFQEYQVCCAAVGLTGDIFRALKDLMVPYSNEIMTVLINNLTEPTIHRTVKPQVLSAFGDIALSIGNHFLPYLSMVLDMLRVASN--LQTDANNFDMNEYINELRESILEAYTGIIQGLK 783          
BLAST of CV885691 vs. ExPASy Swiss-Prot
Match: IMB1_SCHPO (Importin subunit beta-1 OS=Schizosaccharomyces pombe GN=kap95 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.606e-38
Identity = 93/235 (39.57%), Postives = 136/235 (57.87%), Query Frame = 2
Query:    2 LLPAIMGRLGQTLELQ--IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXXXXXXXXRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFK 694
            +L  I+ RL  ++++Q  I+  +DR    +LQ++LC VL  II++F     T S      DQIM L L+    A + S VHE+ +LAIGA+  +   +F  Y+P F  +L   L N +EYQ+C++ VG+VGD+ RAL+ K+LP+CD  M             R+VKP ILSCF DIALAIG  F+ Y+   + ++Q+A+   A     +  +IDY + LR  I EAY GI Q  +
Sbjct:  542 VLSIILTRLETSIQMQSQILDVEDRANHDELQSNLCNVLTSIIRRFGPDIRTSS------DQIMNLLLQTMQTAPKQSVVHEDVLLAIGAMMNSLEEQFEVYVPSFVPFLSSALSNEQEYQLCSVAVGLVGDLARALNAKILPYCDDFMTRLVQDLQSSVLDRNVKPAILSCFSDIALAIGAAFQTYLEAVMVLLQQASSVQAP-PGANFSMIDYVDALRLGIVEAYVGITQAVR 769          
BLAST of CV885691 vs. ExPASy Swiss-Prot
Match: IMB1_YEAST (Importin subunit beta-1 OS=Saccharomyces cerevisiae GN=KAP95 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 64/228 (28.07%), Postives = 110/228 (48.25%), Query Frame = 2
Query:   14 IMGRLGQTLELQI--VSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSST-VHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXXXXXXXXRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQG 688
            +M +LGQT+ +    ++ +D +   +LQ+++  VL  +I+K  S+      +   AD +M LF R+   + S  + ++   AI ALA + G  F KY+  F  YL   L N  +  V    VG + D+  +L++    + D +M             R +KP +LS FGDIA  IG  F  Y+   + +   A     + +    E +DY  ++  ++ +AY GI+ G
Sbjct:  546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS------VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQN--TKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764          
The following BLAST results are available for this feature:
BLAST of CV885691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
IMB1_MOUSE6.089e-4645.45Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 P... [more]
IMB1_HUMAN7.952e-4645.02Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 P... [more]
IMB1_RAT4.363e-4444.59Importin subunit beta-1 OS=Rattus norvegicus GN=Kp... [more]
IMB_DROME2.647e-4142.24Importin subunit beta OS=Drosophila melanogaster G... [more]
IMB1_SCHPO1.606e-3839.57Importin subunit beta-1 OS=Schizosaccharomyces pom... [more]
IMB1_YEAST1.197e-1728.07Importin subunit beta-1 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_019C05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_019_T3_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885691 ID=CV885691; Name=CV885691; organism=Citrus sinensis; type=EST; length=694bp
ACTACTTCCAGCAATCATGGGCAGGTTAGGACAGACTCTTGAACTTCAGA
TTGTGTCATCAGATGATAGAGAAAAGCAAGGAGATTTGCAAGCTTCTCTT
TGTGGTGTTCTGCAGGTCATTATCCAGAAATTTAGTAGTACTGATGCCAC
CAAATCCTTTATCCTCCAGACGGCAGATCAAATTATGGTATTGTTCCTTA
GGGTGTTTGCATGCCGTAGTTCTACAGTGCATGAGGAAGCAATGCTTGCA
ATTGGAGCTCTGGCTTATGCCACTGGACCAGAATTTGCGAAGTATATGCC
TGAGTTCTACCAGTATCTGCAGATGGGGTTGCAGAACTCTGAGGAATATC
AGGTTTGTGCCATTACAGTTGGGGTAGTTGGTGATGTCTGTCGTGCCTTG
GATGACAAGGTCTTACCTTTTTGTGATGGAATCATGTCTCTTCTTCTCAA
TGCTCTGTCAAATAGTCAACTCAACCGTTCTGTTAAGCCTCCAATTTTAT
CTTGCTTTGGGGACATTGCTCTTGCAATAGGAGTGCATTTTGAGAAGTAT
GTCCCCCATGCACTTCAAATGATGCAGGAAGCTGCTAAGGCTTGTGCACA
GTTGGACATGGAAGATGAAGAATTAATAGATTATGGAAACCAGCTCAGGA
GTAGCATCTTTGAGGCATATTCTGGTATTCTCCAGGGCTTCAAG
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