CV885630

Overview
NameCV885630
Unique NameCV885630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.309e-69
Identity = 125/212 (58.96%), Postives = 158/212 (74.53%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  SDGD +S+  SSNIW+DH++L++  DGLID I GSTAITISNCHL+ HD  +LLGA+DT+T+D+ MQVTVAFN F +GLVQRMP  R+GF HVVNNDY  W MYA+GG + PTI+SQGNR+ A   + AKEVTKR    P E + W W+S+GD+F++GA+F  SG P +  KY   D+IK  PGT VQR+T+F+GAL CK   +C
Sbjct:  224 HSGIRTRSDGDGISIIGSSNIWIDHVSLARCSDGLIDVILGSTAITISNCHLTEHDDVMLLGASDTYTQDEIMQVTVAFNHFGRGLVQRMPRCRYGFVHVVNNDYTHWIMYAVGGSQHPTIISQGNRYIAPHIEAAKEVTKRDYAEPAEWSKWTWKSQGDLFVSGAFFVESGGPFEN-KYSKKDLIKAKPGTFVQRLTRFSGALNCKENMEC 434          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.976e-69
Identity = 124/213 (58.22%), Postives = 157/213 (73.71%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNK-NAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G+RG +DGD +S+F ++NIWLDH+++SK QDGLIDAI GSTAITISN H ++H+  +LLGA +   +DKKMQVTVA+N F KGLVQRMP +R+GF HVVNNDY  WE+YAIGG +GPTILS GNRF A  +K + +EVTKR   S  E   W WRSE DVF+N AYF  SG+P  +  +    +IKP  G  V ++TK+AGAL C+ G+ C
Sbjct:  263 HFGHRGEADGDGISIFGATNIWLDHISMSKCQDGLIDAIMGSTAITISNSHFTHHNDVMLLGAQNNNMDDKKMQVTVAYNHFGKGLVQRMPRVRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASESEWKNWNWRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMAVSKLTKYAGALDCRVGKAC 475          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL19_ARATH (Putative pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.091e-67
Identity = 124/213 (58.22%), Postives = 157/213 (73.71%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNK-NAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  +DGD +S++ SSNIWLDH+++SK QDGLIDAI GST ITISN H ++H+  +LLGA +T   DK MQVTVA+N F KGLVQRMP IR+GF HVVNNDY  WE+YAIGG +GPTILS GNRF A  +K + +EVTKR   S +E   W WRS+ DVF+NGAYF  SG+P+ +  +    +IKP  G  V ++TK+AGAL C+ G++C
Sbjct:  260 HFGMRTRADGDGLSIYGSSNIWLDHISMSKCQDGLIDAIVGSTGITISNSHFTHHNDVMLLGAQNTNEADKHMQVTVAYNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKPHYREVTKRDYASEDEWKHWNWRSDKDVFMNGAYFRQSGNPQYKCAHTRQQMIKPKNGLAVSKLTKYAGALDCRVGRRC 472          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 6.295e-64
Identity = 120/213 (56.34%), Postives = 146/213 (68.54%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASG-DPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  SDGD VS+F  S++W+DH +LS   DGLIDAI+GSTAITISN +L++H+K +LLG +DT+ +DK MQVT+AFN F +GLVQRMP  R G+ HVVNNDY  WEMYAIGG   PTI SQGNRF A D+ ++KEVTK  D   +E   W WRSEGD+ LNGA+F  SG  P K   Y     +   P + V  IT  +GAL CK G  C
Sbjct:  220 HYGYRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYEQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDLLLNGAFFTYSGAGPAKSSSYSKASSLAARPSSHVGEITIASGALSCKRGSHC 432          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL6_ARATH (Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.025e-62
Identity = 118/219 (53.88%), Postives = 149/219 (68.04%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASG-------DPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  SDGD +++F ++N+W+DH++++   DG+IDAI GSTAITISN H ++HD+ +L G T+    DKKMQ+TVAFN F K L QRMP +RFG  HVVNNDY  WEMYAIGG   PTI+SQGNRF A   +++K+VTKR      E   W W+SE D FLNGAYF  SG        PK  I  +    I+P PGT+V+R+TK AG L CKPG+ C
Sbjct:  239 HFGLRTVSDGDGINIFGATNVWIDHVSMTDCSDGMIDAIMGSTAITISNSHFTDHDEVMLFGGTNKDVIDKKMQITVAFNHFGKRLKQRMPRVRFGLVHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPPIEDSKQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKF--AIRPQPGTKVRRLTKDAGTLGCKPGKSC 455          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.239e-61
Identity = 116/212 (54.72%), Postives = 145/212 (68.40%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G    SDGD +S+F+S +IW+DH +LS   DGLIDAI GSTAITISN ++++HDK +LLG +D++T+DK MQVT+AFN F +GLVQRMP  R G+ HVVNNDY  WEMYAIGG   PTI SQGNRF A + +  KEVTK  +    E   W WRSEGD+ LNGAYF  SG  +    +     +   P T V  +T+ AGALVC+ G +C
Sbjct:  191 HSGWWTQSDGDGISIFASKDIWIDHNSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFDKEVTKHENAPESEWKNWNWRSEGDLMLNGAYFRESGG-RAASSFARASSLSGRPSTLVASMTRSAGALVCRKGSRC 401          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.819e-61
Identity = 115/217 (53.00%), Postives = 145/217 (66.82%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASG-----DPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H+G R  SDGD +S+F ++NIW+DH+++++  DG+IDAI GSTA+TISN H ++H + +L GA D    DKKMQ+TVAFN F K L QRMP  R+G  HVVNNDY  WEMYAIGG   PTI+SQGNRF A  N+ AK++TKR      E   W W+SEGD FLNGAYF  SG       K +        I+P PGT V+++T  AG L CK G+ C
Sbjct:  243 HIGLRTKSDGDGISLFGATNIWIDHVSMTRCADGMIDAIDGSTAVTISNSHFTDHQEVMLFGARDEHVIDKKMQITVAFNHFGKRLEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPPNEEAKQITKREYTPYGEWKSWNWQSEGDYFLNGAYFVQSGKANAWSSKPKTPLPNKFTIRPKPGTMVRKLTMDAGVLGCKLGEAC 459          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 8.507e-61
Identity = 117/212 (55.19%), Postives = 143/212 (67.45%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  SDGDAVS+F  S++W+DH +LS   DGLIDAI GSTAITISN +LS+H+K +LLG +D++T DK MQVT+AFN F +GLVQRMP  R G+ HVVNNDY  W+MYAIGG   PTI SQGNRF A ++   KEVTK  D    +   W WRSEGD+FLNGA+F  SG       Y     +   P + V  +T  AGAL C+ G +C
Sbjct:  198 HYGWRTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSHHNKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLAPNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASS-SYAKASSLSARPSSLVASVTSNAGALFCRKGSRC 408          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 8.507e-61
Identity = 117/212 (55.19%), Postives = 145/212 (68.40%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  +DGD +S+F SS+IW+DH +LS   DGLIDAI GSTAITISN +L++H++AILLG TD++T DK MQVT+A+N F +GL+QRMP  R G+ HVVNNDY  WEMYAIGG   PTI SQGNRF A  N+ AKEVTKR+     E N W WRS+GD+ LNGAYF +SG       Y     +     + V  +T  +GAL C+ G  C
Sbjct:  208 HYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRDKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGNRFAKEVTKRVGAGKGEWNNWNWRSQGDLMLNGAYFTSSG-AGASANYARASSLAAKSSSLVGMLTSSSGALKCRIGTLC 418          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.451e-60
Identity = 113/214 (52.80%), Postives = 153/214 (71.50%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEE-GNGWIWRSEGDVFLNGAYFNASGDPKKQIKY-ELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H+G R  SDGD +S+F +S IW+DH+++ +  DGLIDA++GST ITISN H ++H++ +L GA+D+ + D+ MQ+T+AFN F K L+QRMP  R+G+ HVVNNDY  W MYAIGG   PTI+ QGNRF A  +   K+VTKR + +PE     W WRSEG++F+NGAYF  SGDP+   K+ +L D I  AP  +V  +T+FAG L CKPG+ C
Sbjct:  237 HIGIRTKSDGDGISIFGASYIWIDHVSMQRCYDGLIDAVEGSTGITISNGHFTDHNEVMLFGASDSSSIDQVMQITLAFNHFGKRLIQRMPRCRWGYIHVVNNDYTHWNMYAIGGSMHPTIIHQGNRFIAPPDIFKKQVTKR-EYNPESVWMQWTWRSEGNLFMNGAYFTESGDPEWSSKHKDLYDGISAAPAEDVTWMTRFAGVLGCKPGKPC 449          
The following BLAST results are available for this feature:
BLAST of CV885630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PEL_LILLO1.309e-6958.96Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]
PEL7_ARATH4.976e-6958.22Probable pectate lyase 7 OS=Arabidopsis thaliana G... [more]
PEL19_ARATH2.091e-6758.22Putative pectate lyase 19 OS=Arabidopsis thaliana ... [more]
PEL22_ARATH6.295e-6456.34Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL6_ARATH2.025e-6253.88Probable pectate lyase 6 OS=Arabidopsis thaliana G... [more]
PEL_ZINEL2.239e-6154.72Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL3_ARATH3.819e-6153.00Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL5_ARATH8.507e-6155.19Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL14_ARATH8.507e-6155.19Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL59_SOLLC1.451e-6052.80Probable pectate lyase P59 OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016G07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885630 ID=CV885630; Name=CV885630; organism=Citrus sinensis; type=EST; length=950bp
TTATTAATTTTGTACATCCATAAAGAAACACGGTTACCATTATGAATAAG
CACATCAAACACGTTGATTGATTGCATTGGACAAAAAAAAAAAAGCCTTA
ATGTTGGATATGGTTATAGAAACTAACCAAATCCATGAAAAAATTGGACT
AAATGAGAGGATTACTGTTCATTTATTTTCTTCATCCTCTCATTTTCCGT
CCCAATTTTCTGTCTAATATTTTGGCCATCATTTTGAACCAATAGCAGTG
AGCTAGCCTTAGGCTATGGCTAGGTCACTGTTTCTCTATCAATGCAAAAA
ATCTAGTAAATTAACATTGCTGGCCTGGCTTGCAGACAAGTGCTCCAGCA
AATTTTGTGATCCTCTGAACTTCTGTTCCTGGCGCTGGTTTAATCACATC
ATTCAGTTCGTATTTGATTTGCTTTTTCGGGTCACCGGATGCATTGAAGT
AAGCCCCATTCAAGAATACATCTCCCTCTGATCTCCATATCCAACCATTC
CCTTCTTCAGGGCTGCAGTCCATTCTCTTTGTCACCTCTTTGGCATTCTT
GTTATCTGAGGCAAAGAACCTATTACCCTGGCTAAGAATGGTGGGGCCTT
TGAGACCACCAATTGCATACATTTCCCATTGATTGTAATCATTGTTCACA
ACATGAGCGAAACCAAATCTGATGCATGGCATTCTTTGCACCAATCCCTT
ATCAAAGCGGTTGAATGCTACAGTCACTTGCATCTTTTTATCTTCCGTGA
ACGTATCGGTTGCGCCTAGCAAAATTGCCTTATCATGGTTGGAGAGGTGG
CAGTTTGAAATGGTGATGGCTGTAGATCCTTGAATGGCATCAATAAGCCC
ATCTTGGGCTTTAGATAATGTAAGATGATCAAGCCAAATATTTGACGAAC
TAAATACTGAAACAGCGTCCCCATCACTTGGACCTCTATTTCCCACATGA
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