CV885547

Overview
NameCV885547
Unique NameCV885547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885547 vs. ExPASy Swiss-Prot
Match: DECR2_ARATH (Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.463e-23
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = -1 
Query:  289 DIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRPRHLPKDAVKQLSRTVEKRSRDKPIGVPKSKL 480
            DIAMAALYL+ D+GKYV+G T++VDGGLWLS+PRHLPK+AVKQLSR VEKRSR KP+G+P SKL
Sbjct:  235 DIAMAALYLSCDSGKYVSGLTMVVDGGLWLSKPRHLPKEAVKQLSRAVEKRSRAKPVGLPTSKL 298
The following BLAST results are available for this feature:
BLAST of CV885547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DECR2_ARATH1.463e-2378.13Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_016C11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885547 ID=CV885547; Name=CV885547; organism=Citrus sinensis; type=EST; length=480bp
CCTTTTTTTTTTCGATTGAAGTATGCCCAAATTATTAAGAAAAGAAAAGC
GACGTGAGAAATTACATGCATTTATAGTAGCCAAATGCAGAAGAAACTAT
GCAGTTATTCAATGGATGGTGTGGAGAAATATGATGAATAATCTACAAAG
CATCTGACTGTTCTAAAAATTTAAAATGTAAACTACAGCATCGGCAACTC
CGTAAGTGATTTTATTGAGTGGTATAAGCTCGCTGCTTAGAACCCAAATG
TAAACAATTGCATGCCTGGACCCTGTTGAACTGGTTCAGAGCTTGCTCTT
TGGAACACCAATGGGTTTATCCCTAGATCTCTTCTCCACAGTTCGAGAAA
GCTGCTTAACAGCATCTTTTGGCAAATGACGAGGCCGGCTCAGCCAAAGT
CCTCCATCGACTATAAGAGTTGTCCCATTGACATATTTCCCTGTATCAGA
AGTAAGGTACAGAGCAGCCATAGCAATATC
back to top