CV885540

Overview
NameCV885540
Unique NameCV885540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885540 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 370
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV885540 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 370
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV885540 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 370
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV885540 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 370
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV885540 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 370
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV885540 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 370
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV885540 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 370
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV885540 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 370
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV885540 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 370
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV885540 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  137 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 370
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CV885540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA6.814e-37100.00Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA6.814e-37100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE6.814e-37100.00Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE6.814e-37100.00Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR6.814e-37100.00Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL6.814e-37100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ6.814e-37100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH6.814e-37100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT6.814e-37100.00Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT6.814e-37100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_016C08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T3_C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885540 ID=CV885540; Name=CV885540; organism=Citrus sinensis; type=EST; length=539bp
GGGCACATTCAAATTTCTCTATCCAAATTCTCTTTCGAGGAACAGCGGAA
AGTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAG
GGATTGGGAAAGGGAGGCGCCAAGCGTCACCGTAAGGTGCTTCGCGATAA
CATTCAGGGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGAGGTG
GAGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTG
AAGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCA
CGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGA
GGCAGGGCAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGTTCT
GGAATTAAATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGATGG
GGCTCTTAGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAAGTT
AAATCTTATCTTTATATTTGAGGCAAAAAAAAAAAAAAA
back to top