CV885539

Overview
NameCV885539
Unique NameCV885539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.838e-38
Identity = 86/210 (40.95%), Postives = 119/210 (56.67%), Query Frame = -2
Query:  152 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY--AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 772
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN   + +G I N+GNPHNE ++R+L EM+   +    +          +DV S  +YG+GY D   R P +    + L W P   +   +  TL Y  RT
Sbjct:  453 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD---TLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEMLLTSFNAHPLRDRFPPFAGFIDVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRT 659          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.841e-38
Identity = 81/210 (38.57%), Postives = 127/210 (60.48%), Query Frame = -2
Query:  152 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 772
            ED+S+ + G I KQRW Y+ +KQL++R+I+A G +NGL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL++GG+ +R F  I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +    + L W PK  + + +E TL +  RT
Sbjct:  446 EDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPDNEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEETVEHTLDFFLRT 652          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.839e-37
Identity = 84/210 (40.00%), Postives = 119/210 (56.67%), Query Frame = -2
Query:  152 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY--AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 772
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN   + +G I N+GNPHNE ++R+L +M+   +    +          ++V S  +YG+GY D   R P +    + L W P   +   +  TL Y  RT
Sbjct:  452 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD---TLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRNGQCDGQIINIGNPHNEASIRELGDMLLTSFNAHPLRDRFPPFAGFIEVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRT 658          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.402e-37
Identity = 85/210 (40.48%), Postives = 120/210 (57.14%), Query Frame = -2
Query:  152 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 772
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KL+DGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+ E +    +           DV S  +YG+GY D + R P +    + L W P  ++   +  TL Y  RT
Sbjct:  446 EDHSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLMDGGAQKRCFTDINDGIEALFRIIENRDGLCDGQIVNIGNPTNEASIRELAEMLLESFNNHPLRDRFPPFAGFKDVESSSYYGKGYQDVEHRTPSIKNARRLLDWQPTIAMQQTVADTLDYFLRT 652          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_PROMH (Bifunctional polymyxin resistance protein arnA OS=Proteus mirabilis (strain HI4320) GN=arnA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.138e-37
Identity = 84/215 (39.07%), Postives = 123/215 (57.21%), Query Frame = -2
Query:  137 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAI 772
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KLVDGG+ +R F  I D IEA+  +IEN   + +G I N+GNP NE ++R+LAEM+ + + K  + G          + S  +YG+GY D + R P +    + L W P       +E TL +  R   E +
Sbjct:  446 EDNSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLD---NLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIENRDNKCDGQIINIGNPTNEASIRELAEMLLDCFEKHELRGHFPPFAGFKKIESSSYYGKGYQDVEHRKPSIKNAERLLDWKPTIETRQTVEETLDFFLRGAVEEL 657          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.098e-37
Identity = 84/208 (40.38%), Postives = 121/208 (58.17%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED+S  I G I KQRW Y+ +KQL++R+I+A GA+  L+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG+ +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   + K   E     P      D+ S  +YG+GY D + R P +    + L W P+ +L   +  TL +
Sbjct:  446 EDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKENLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDIHDGIEALFRIIENRDGACDGQIINIGNPTNEASIRELAEMLLRCFEK--HELRHNFPPFAGFKDIESSAYYGKGYQDVEYRTPSIRNARRILDWQPEIALEQTVMETLDF 648          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.129e-37
Identity = 79/206 (38.35%), Postives = 122/206 (59.22%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED+S+ + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I D IEA+ L+IEN  +  +G I N+GNP NE +++QLAE + E + +  +           +V S  +YG+GY D + R P +    Q L W P  ++   ++ TL +
Sbjct:  446 EDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKEGLRFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCFTDIHDGIEALFLIIENKQKNCDGQIINIGNPENEASIKQLAEQLLESFERHPLRDRFPPFAGFREVESSTYYGKGYQDVEHRKPSIRNAKQLLNWQPTIAMDKTIDDTLDF 648          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.656e-36
Identity = 79/210 (37.62%), Postives = 124/210 (59.05%), Query Frame = -2
Query:  152 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 772
            ED S+ + G I KQRW Y+ +KQL++R+I+A G +  L+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL++GG+ +R F  I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +    + L W PK  + + +E TL +  RT
Sbjct:  446 EDTSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKYDLKFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEETVEHTLDFFLRT 652          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_ENT38 (Bifunctional polymyxin resistance protein arnA OS=Enterobacter sp. (strain 638) GN=arnA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.917e-36
Identity = 79/213 (37.09%), Postives = 123/213 (57.75%), Query Frame = -2
Query:  152 VLKEDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 781
            V  ED S+ I G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I D IEA+  +IEN  +  +G I N+GNP NE ++++LAEM+   + K  +           +V S  +YG+GY D + R P +   ++ + W P   +   ++ TL +  +T
Sbjct:  443 VFDEDHSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCFTDISDGIEALFRIIENKNSNCDGQIINIGNPDNEASIKELAEMLLASFEKHPLRNHFPPFAGFREVESSTYYGKGYQDVEHRKPSIRNAHRLISWTPTVEMEKTIDETLDFFLKT 652          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_ECO7I (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.917e-36
Identity = 82/225 (36.44%), Postives = 126/225 (56.00%), Query Frame = -2
Query:  128 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAIKQA 772
            ED S+ I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT     KQ+
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRTVDLTDKQS 660          
The following BLAST results are available for this feature:
BLAST of CV885539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_ERWCT2.838e-3840.95Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP74.841e-3838.57Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PECCP1.839e-3740.00Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP52.402e-3740.48Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PROMH3.138e-3739.07Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERE84.098e-3740.38Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWT99.129e-3738.35Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP32.656e-3637.62Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ENT385.917e-3637.09Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO7I5.917e-3636.44Bifunctional polymyxin resistance protein arnA OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_016C06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885539 ID=CV885539; Name=CV885539; organism=Citrus sinensis; type=EST; length=830bp
AAAATGTAGAGTATATTCGAAACAACCGTTCAGATATATTCAAGACTAAC
TCAAAAAAGAATTTAAATGTTTGCCACAAGCATCTGAACACTATATCTCC
TCAGCTGGATGCAACTGGTTTTGCCACGGCCTGCTTTATGGCCTCCGCAT
ATGTCCTGTGCTGATAGGTAAGGGTTGATTCAAGCAAGTCCCAAAGTGAG
GTCTTCGGGTTCCAACCAAGCTGTTGATTTATAATGGTCATGTCTGGAAT
TCTCTTGTCACTATCATCATATCCTTCACCATAAAATTCTTTGGAGCTGA
CATCAACTGTTGGCTCCTCCAAAGCAGCCTCTCCACTCACCTTTGCATAC
ACCTCAGTCATCATCTCAGCAAGCTGTCGAACTGTAACTTCATTGTGGGG
GTTGCCCACATTGAAAATATGACCATTGGCCCTTGCTGGATTTTCAATCA
TTAATAGAACAGCTTCAATAGCATCCTTTATGTAAATAAAAGTCCTCTGA
GATTGGCCACCGTCGACAAGCTTGAGTGGCTGCCGGCGAAGGAGATTGTT
ACTAAAGCATGCCAGAACCCTTGGAACACCCTCACTTGGACCATCAATGC
CGGGAATGAAGTCCATCCTCGGACCAATCCAGTTAAAGGGCCTCACAATG
GTGAACTCAAGACCATTCTCTGCACCCTCAGCATAAATCAGCCTTTCAAT
CAATTGCTTTGCACATGCATACGACCACCTCTGCTTCTCAATAGAGCCAA
AAATGCAGGAGGAGGCATCTTCTTTAAGAACATAGTAAGCAGGATCCTGC
CGAAGAGGACTATCTTTAGGAAGAAAGCCT
back to top