CV885529

Overview
NameCV885529
Unique NameCV885529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885529 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.812e-17
Identity = 57/169 (33.73%), Postives = 96/169 (56.80%), Query Frame = 2
Query:   26 EDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGS-VSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRNRVGFDYEAF 529
            +++  E  TGK     + DK GRP L + P  QN+ ++  QI++LV+ +E AI  + P  E +  LI+F+  +  S  SV   +E  N+LQ HY ERLG A++ N P     F+ ++ PF++P T +K++F   N+P  + + +     ++LDS+FGG     + +E +
Sbjct:  674 DEIQEENATGKQVLLGY-DKDGRPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFIDPITREKLKF---NEPLDRYVPK-----DQLDSNFGGSLHFEYHHEKY 833          
BLAST of CV885529 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.534e-16
Identity = 56/194 (28.87%), Postives = 108/194 (55.67%), Query Frame = 2
Query:   11 EKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGW-----TMGSVSVK---VTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRNRVGFDYEAFGQLMRADDKKKSD 568
            +KI  + VA E E+GK     + +   RP+L ++PG QN+ ++  Q+++LV+ +E  I  +   ++ +  LIDF+ +       G+  +    V +E  ++LQ HYPERLG A+L N P +  +F  ++ PF++P T +K+ F   ++P  + + +     N+LDS +GG  +  ++++ +   +    ++K D
Sbjct:  129 DKITADLVAVENESGKQVILGY-ENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVF---DEPFVKYVPK-----NELDSLYGGDLKFKYNHDVYWPALVETAREKRD 313          
BLAST of CV885529 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15
Identity = 47/183 (25.68%), Postives = 87/183 (47.54%), Query Frame = 2
Query:    2 YKPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKY--LVYCMENAIMNLNPDR--EQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALF---DINKLDSSFGGRNRVGFDYEAF 529
            ++P+ I      RE  +      N  DK GRP++   P      +   ++K+  LVY +E     ++  +  EQ  +++D++ +  G++ +K   E  + L +H PER+G ++  +PP +F   W ++ PFL   T  KVRF  S     ++    L    DI  L+ + GG     ++ + +
Sbjct:  104 FRPQDIQLGGDIREIGSAGCVYVNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFGSGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLNEVTLSKVRFINSKKVDGKRTFAELLEYVDIENLEQNLGGNLDYNYNIDEY 286          
BLAST of CV885529 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.708e-13
Identity = 55/174 (31.61%), Postives = 87/174 (50.00%), Query Frame = 2
Query:   26 EDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGW------TMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRNRVGFDYEAF 529
            + VA E ETGK     F D   RP+  M+ G QN+ S+  Q++ LVY ME A        E++  L+DF+ +      T  +  + + R   NV+Q+HYPERL   +L N P    +F  ++ PFL+P T  K  F   ++P      E   + ++LD+ + G     + +E +
Sbjct:  138 DKVAVENETGKQVILGF-DNAKRPLYYMKNGRQNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSYKEPGIITDKAPPISIARMCLNVMQDHYPERLAKCVLINIPWFAWAFLKMMYPFLDPATKAKAIF---DEP-----FENHIEPSQLDALYNGLLDFKYKHEVY 302          
The following BLAST results are available for this feature:
BLAST of CV885529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YJX4_SCHPO1.812e-1733.73CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
PDR16_YEAST1.534e-1628.87Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
RSC5_DICDI3.779e-1525.68Random slug protein 5 OS=Dictyostelium discoideum ... [more]
PDR17_YEAST2.708e-1331.61Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016C01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T3_C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885529 ID=CV885529; Name=CV885529; organism=Citrus sinensis; type=EST; length=894bp
ATACAAGCCAGAGAAGATCGTATGGGAAGATGTTGCTCGAGAAGCTGAAA
CAGGGAAACTTTACAGAGCTAATTTCTGTGACAAATTAGGAAGACCTGTT
CTTATAATGAGGCCAGGTTTCCAGAATTCAAGCTCAACAGAGGGGCAGAT
CAAGTACTTGGTGTATTGCATGGAAAATGCTATAATGAATTTGAACCCTG
ATAGGGAGCAAATGGTGTGGCTAATTGATTTTCAAGGGTGGACAATGGGG
AGTGTGTCAGTAAAAGTGACTCGGGAAACAGCTAATGTGTTGCAAAATCA
TTACCCTGAGAGATTGGGCCTGGCAATCCTCTATAATCCCCCAAAAGTAT
TCGAATCTTTTTGGACGGTGGTGAAACCATTCCTTGAGCCAAAGACATAC
AAGAAAGTGAGGTTTGCCTATTCTAATGATCCTCAGAGCCAGAAAATAAT
GGAAGCCCTCTTTGATATTAATAAATTGGATTCTTCTTTTGGGGGAAGAA
ACAGAGTTGGGTTTGATTATGAAGCATTTGGGCAGCTTATGAGGGCTGAT
GATAAGAAAAAGTCTGATTTAATGAACTCCGGATGCTCAGTACCAACTGA
CCATCTATTAGTTGCATCTCAGTCATCACAATCCGAGTCATTGACATCAG
ACCACTGTTCGGATGACTCTGATAACGAGTTAGATGAGGCAACTTCCACC
TTGGAGGATGTTGATGAGAAAGTACCGGGGCTGAAACTCGGCTATGATGA
TGTTCCAAAGAGTGAAGCTGCAATGGCGAAACAAGTACAATGACTTGGGA
TGAAATCATGGGGCCGGTTCTGGTTTCTATGATCCTTCTTTACAAATTCT
GATCATACCTTAATGCAATCTTATTCAGTTAGTTTCTTGAAAGC
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