CV885517 | Citrus Genome Database

Overview


Name	CV885517
Unique Name	CV885517
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	883

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library UCRCS04-UCR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_DROSI (Cytochrome b OS=Drosophila simulans GN=mt:Cyt-b PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.117e-46
Identity = 113/270 (41.85%), Postives = 131/270 (48.52%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P  I    NFGSLL +CLI QILTGLFLA HY  DINLAF           +G L+R+ HANGAS                 S+ F                 AF+GYVLP GQ+SF GATVITNLLSAIPYL                ATLTR                         TGSNNP+G+N N DKI F PY                            D +NFI ANP++TP HIQPE YFLF+Y+ILR+IPNK
Sbjct:   19 LVDLPAPINISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFYSVNHICRDVNYGWLLRTLHANGASFFFICIYLHVGRGIYYGSYMFTPTWLIGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDLVQWLWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFILISLVLISPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNK 288

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_DROSE (Cytochrome b OS=Drosophila sechellia GN=mt:Cyt-b PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.117e-46
Identity = 113/270 (41.85%), Postives = 131/270 (48.52%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P  I    NFGSLL +CLI QILTGLFLA HY  DINLAF           +G L+R+ HANGAS                 S+ F                 AF+GYVLP GQ+SF GATVITNLLSAIPYL                ATLTR                         TGSNNP+G+N N DKI F PY                            D +NFI ANP++TP HIQPE YFLF+Y+ILR+IPNK
Sbjct:   19 LVDLPAPINISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFYSVNHICRDVNYGWLLRTLHANGASFFFICIYLHVGRGIYYGSYMFTPTWLIGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDLVQWLWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFTVMIFILISLVLISPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNK 288

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_DROMA (Cytochrome b OS=Drosophila mauritiana GN=mt:Cyt-b PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.117e-46
Identity = 113/270 (41.85%), Postives = 131/270 (48.52%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P  I    NFGSLL +CLI QILTGLFLA HY  DINLAF           +G L+R+ HANGAS                 S+ F                 AF+GYVLP GQ+SF GATVITNLLSAIPYL                ATLTR                         TGSNNP+G+N N DKI F PY                            D +NFI ANP++TP HIQPE YFLF+Y+ILR+IPNK
Sbjct:   19 LVDLPAPINISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFYSVNHICRDVNYGWLLRTLHANGASFFFICIYLHVGRGMYYGSYMFTPTWLIGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDLVQWLWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFILISLVLISPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNK 288

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_OSTNU (Cytochrome b OS=Ostrinia nubilalis GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.071e-46
Identity = 112/270 (41.48%), Postives = 132/270 (48.89%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LPTP+ I  + NFGSLL +CLI QI+TGLFL  +Y  +I LAF           +G LIR+ HANGAS                 SFN K                AF+GYVLP GQ+SF GATVITNLLSAIPYL                ATLTR                         TGSNNPLGIN N DKI F P+                            D +NF  ANP++TP HIQPE YFLF+Y+ILR+IPNK
Sbjct:   21 LIDLPTPSNISSLWNFGSLLAMCLIIQIITGLFLTMYYTANIELAFYSVNYICRNVNYGWLIRTLHANGASFFFICIYIHIGRGIYYESFNLKYTWMVGVIILFLLMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTMLVNWIWGGFAIDNATLTRFYTFHFILPFIILMMTMIHLLFLHQTGSNNPLGINSNLDKIPFHPFFTFKDMIGFIIISFLLIFLTLTNPYLLGDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNK 290

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_PRIGL (Cytochrome b OS=Prionace glauca GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.317e-46
Identity = 112/270 (41.48%), Postives = 132/270 (48.89%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P+ I    NFGSLL +CLI QILTGLFLA HY  DI++AF           +G LIR+ HANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSA PY+                ATLTR                         TGSNNPLGIN N DKI+F PY                            D  NFI ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   19 LVDLPAPSNISLWWNFGSLLGLCLIIQILTGLFLAMHYTADISMAFSSVVHICRDVNYGWLIRNIHANGASLFFICIYLHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDILVQWIWGGFSVDNATLTRFFAFHFLLPFLILALTVIHLLFLHETGSNNPLGINSNADKISFHPYFSYKDLLGFFIMIFFLATLALFMPNLLGDAENFIPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_DROYA (Cytochrome b OS=Drosophila yakuba GN=mt:Cyt-b PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.317e-46
Identity = 112/270 (41.48%), Postives = 131/270 (48.52%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P  I    NFGSLL +CLI QILTGLFLA HY  D+NLAF           +G L+R+ HANGAS                 S+ F                 AF+GYVLP GQ+SF GATVITNLLSAIPYL                ATLTR                         TGSNNP+G+N N DKI F PY                            D +NFI ANP++TP HIQPE YFLF+Y+ILR+IPNK
Sbjct:   19 LVDLPAPINISSWWNFGSLLGLCLIIQILTGLFLAMHYTADVNLAFYSVNHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGMDLVQWLWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFILISLVLISPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNK 288

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_COLHO (Cytochrome b OS=Cochliomyia hominivorax GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.317e-46
Identity = 111/270 (41.11%), Postives = 132/270 (48.89%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P+ I    NFGSLL +CL+ QILTGLFLA HY  DI+LAF           +G L+R+ HANGAS                 S+ F                 AF+GYVLP GQ+SF GATVITNLLSAIPYL                ATLTR                         TGSNNP+G+N N DKI F PY                            D +NFI ANP++TP HIQPE YFLF+Y+ILR+IPNK
Sbjct:   19 LVDLPAPSNISAWWNFGSLLFLCLMIQILTGLFLAMHYTADISLAFNSVNHICRDVNYGWLLRTMHANGASFFFICIYLHVGRGIYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAATLIHILFLHETGSNNPIGVNSNIDKIPFHPYFTFKDIVGFIMMTMILILLVLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 288

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_SAMCR (Cytochrome b OS=Samia cynthia ricini GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.944e-46
Identity = 112/270 (41.48%), Postives = 132/270 (48.89%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP+P+ I    NFGSLL +CL+ QILTGLFL  +Y  +I LAF           +G LIR+ HANGAS                 SFN K                AF+GYVLP GQ+SF GATVITNLLSAIPYL                ATLTR                         TGSNNPLG+N N DKI F PY                            D +NFI ANP++TP HIQPE YFLF+Y+ILR+IPNK
Sbjct:   21 LIDLPSPSNISMWWNFGSLLALCLMIQILTGLFLTMYYTANIELAFFSVNYICRNVNYGWLIRTIHANGASFFFICIYLHIGRGIYYESFNLKYTWFIGVIILFMLMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTMLVNWIWGGFAVDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLNSNMDKIPFHPYFTYKDLIGFLILMMLLLMLTLSNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNK 290

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_DANRE (Cytochrome b OS=Danio rerio GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.184e-45
Identity = 112/270 (41.48%), Postives = 130/270 (48.15%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LPTP  I    NFGSLL +CLI QILTGLFLA HY +DI+ AF           FG LIRS HANGAS                 S+ +                 AFVGYVLP GQ+SF GATVITNLLSA+PY+                ATLTR                         TGSNNPLG+N N DKI F PY                            D  NF  ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   18 LVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIHIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFIIIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_NEGBR (Cytochrome b OS=Negaprion brevirostris GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.547e-45
Identity = 111/270 (41.11%), Postives = 132/270 (48.89%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P+ I    NFGSLL +CLI QILTGLFLA HY  DI++AF           +G LIR+ HANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSA PY+                ATLTR                         TGSNNPLGIN + DKI+F PY                            D  NFI ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   19 LIDLPAPSNISLWWNFGSLLGLCLIIQILTGLFLAMHYTADISMAFSSVVHICRDVNYGWLIRNIHANGASLFFICVYLHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPWGQMSFWGATVITNLLSAFPYIGNMLVQWIWGGFSVDNATLTRFFAFHFLLPFLILALTVIHLLFLHETGSNNPLGINSDADKISFHPYFSYKDLLGFFVMIFLLATLALFTPNLLGDAENFIPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

The following BLAST results are available for this feature:

BLAST of CV885517 vs. ExPASy Swiss-Prot

BLAST of CV885517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CYB_DROSI	3.117e-46	41.85	Cytochrome b OS=Drosophila simulans GN=mt:Cyt-b PE...	[more]
CYB_DROSE	3.117e-46	41.85	Cytochrome b OS=Drosophila sechellia GN=mt:Cyt-b P...	[more]
CYB_DROMA	3.117e-46	41.85	Cytochrome b OS=Drosophila mauritiana GN=mt:Cyt-b ...	[more]
CYB_OSTNU	4.071e-46	41.48	Cytochrome b OS=Ostrinia nubilalis GN=MT-CYB PE=3 ...	[more]
CYB_PRIGL	5.317e-46	41.48	Cytochrome b OS=Prionace glauca GN=mt-cyb PE=3 SV=...	[more]
CYB_DROYA	5.317e-46	41.48	Cytochrome b OS=Drosophila yakuba GN=mt:Cyt-b PE=3...	[more]
CYB_COLHO	5.317e-46	41.11	Cytochrome b OS=Cochliomyia hominivorax GN=MT-CYB ...	[more]
CYB_SAMCR	6.944e-46	41.48	Cytochrome b OS=Samia cynthia ricini GN=MT-CYB PE=...	[more]
CYB_DANRE	1.184e-45	41.48	Cytochrome b OS=Danio rerio GN=mt-cyb PE=3 SV=1	[more]
CYB_NEGBR	1.547e-45	41.11	Cytochrome b OS=Negaprion brevirostris GN=mt-cyb P...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_2_016B06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T3_B06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV885517 ID=CV885517; Name=CV885517; organism=Citrus sinensis; type=EST; length=883bp
CCAATATTAAATTTACCAACACCTGCCAGAATTAGATTTATATGAAATTT
TGGATCTTTACTAATAATTTGTTTAATTAACCAAATTTTAACAGGTTTAT
TTTTAGCATTCCATTATAAAACAGATATTAATTTAGCATTTCAAAGAATT
ATTAATATAAACCGTAATATTAATTTTGGATGATTAATTCGATCTTTTCA
TGCTAATGGAGCATCAATATTTTTTATTATAATTTATATTCATATTAGAC
GAGGAATTTATATAAACTCTTTTAATTTTAAAATAACTTGAATTATCGGA
GTAATATTATTATTACTAACAATAATAACAGCTTTTGTAGGATATGTATT
ACCTTGAGGACAAATATCATTTTGAGGAGCAACAGTAATTACAAATCTCT
TATCAGCAATTCCTTATTTAGGAAATTCAATTGTTATTTGAATCTGAGGA
GGATTTTCTATTAATAATGCAACTTTAACACGATTTTTTTCAATTCATTT
TATTTTACCATTTATTATTATCTTATTTACATTTATTCATCTATTTTTTT
TACATATAACAGGATCAAATAATCCTTTAGGAATTAATAGAAATTTTGAT
AAAATTACTTTTTCACCATATTTTTTAATTAAAGATTTAATTGGATTAAT
CATATTTATATGAATATTTTTAATTTTAACCTTAATTTTTCCATATCTTC
TTAATGATCATAATAATTTTATTATAGCAAATCCAATAATTACCCCTAAC
CATATTCAACCAGAATGATATTTCTTATTTTCTTATTCAATTTTACGAGC
AATTCCAAATAAACTAGGAGGAGTCATTGCATTAATATTATCAATTTTAA
TTTTATTAGTATTACCTATATTAAATAACAAAA