CV885510

Overview
NameCV885510
Unique NameCV885510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2254 contig Csv1_Contig2254:522..1442. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STAAW (GTP-binding protein era homolog OS=Staphylococcus aureus (strain MW2) GN=era PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 79/185 (42.70%), Postives = 114/185 (61.62%), Query Frame = -3 
Query:  365 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 919
            +++K QTTR++I G+ +  + Q+I  DTPGI + K H L   MMK  ++     D I+ +V+A +   R DE + E + + K   P+ LVLNK DL+ P E+  K+E Y+ + D  E++P+SA  G  V+   D + T LP GP YYP D +S+HPE+F VGEIIREKI      E+P+A  VNV
Sbjct:   34 MSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKT--PVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNV 215
[Close]
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STAAT (GTP-binding protein era homolog OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=era PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 79/185 (42.70%), Postives = 114/185 (61.62%), Query Frame = -3 
Query:  365 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 919
            +++K QTTR++I G+ +  + Q+I  DTPGI + K H L   MMK  ++     D I+ +V+A +   R DE + E + + K   P+ LVLNK DL+ P E+  K+E Y+ + D  E++P+SA  G  V+   D + T LP GP YYP D +S+HPE+F VGEIIREKI      E+P+A  VNV
Sbjct:   34 MSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKT--PVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNV 215
[Close]
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STAAS (GTP-binding protein era homolog OS=Staphylococcus aureus (strain MSSA476) GN=era PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 79/185 (42.70%), Postives = 114/185 (61.62%), Query Frame = -3 
Query:  365 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 919
            +++K QTTR++I G+ +  + Q+I  DTPGI + K H L   MMK  ++     D I+ +V+A +   R DE + E + + K   P+ LVLNK DL+ P E+  K+E Y+ + D  E++P+SA  G  V+   D + T LP GP YYP D +S+HPE+F VGEIIREKI      E+P+A  VNV
Sbjct:   34 MSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKT--PVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNV 215
[Close]
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STAAR (GTP-binding protein era homolog OS=Staphylococcus aureus (strain MRSA252) GN=era PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 79/185 (42.70%), Postives = 114/185 (61.62%), Query Frame = -3 
Query:  365 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 919
            +++K QTTR++I G+ +  + Q+I  DTPGI + K H L   MMK  ++     D I+ +V+A +   R DE + E + + K   P+ LVLNK DL+ P E+  K+E Y+ + D  E++P+SA  G  V+   D + T LP GP YYP D +S+HPE+F VGEIIREKI      E+P+A  VNV
Sbjct:   34 MSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKT--PVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNV 215
[Close]
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STAAN (GTP-binding protein era homolog OS=Staphylococcus aureus (strain N315) GN=era PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 79/185 (42.70%), Postives = 114/185 (61.62%), Query Frame = -3 
Query:  365 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 919
            +++K QTTR++I G+ +  + Q+I  DTPGI + K H L   MMK  ++     D I+ +V+A +   R DE + E + + K   P+ LVLNK DL+ P E+  K+E Y+ + D  E++P+SA  G  V+   D + T LP GP YYP D +S+HPE+F VGEIIREKI      E+P+A  VNV
Sbjct:   34 MSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKT--PVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNV 215
[Close]
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STAAM (GTP-binding protein era homolog OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=era PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 79/185 (42.70%), Postives = 114/185 (61.62%), Query Frame = -3 
Query:  365 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 919
            +++K QTTR++I G+ +  + Q+I  DTPGI + K H L   MMK  ++     D I+ +V+A +   R DE + E + + K   P+ LVLNK DL+ P E+  K+E Y+ + D  E++P+SA  G  V+   D + T LP GP YYP D +S+HPE+F VGEIIREKI      E+P+A  VNV
Sbjct:   34 MSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKT--PVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNV 215
[Close]
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STAAE (GTP-binding protein era homolog OS=Staphylococcus aureus (strain Newman) GN=era PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 79/185 (42.70%), Postives = 114/185 (61.62%), Query Frame = -3 
Query:  365 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 919
            +++K QTTR++I G+ +  + Q+I  DTPGI + K H L   MMK  ++     D I+ +V+A +   R DE + E + + K   P+ LVLNK DL+ P E+  K+E Y+ + D  E++P+SA  G  V+   D + T LP GP YYP D +S+HPE+F VGEIIREKI      E+P+A  VNV
Sbjct:   34 MSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKT--PVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNV 215
[Close]
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STAAC (GTP-binding protein era homolog OS=Staphylococcus aureus (strain COL) GN=era PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 79/185 (42.70%), Postives = 114/185 (61.62%), Query Frame = -3 
Query:  365 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 919
            +++K QTTR++I G+ +  + Q+I  DTPGI + K H L   MMK  ++     D I+ +V+A +   R DE + E + + K   P+ LVLNK DL+ P E+  K+E Y+ + D  E++P+SA  G  V+   D + T LP GP YYP D +S+HPE+F VGEIIREKI      E+P+A  VNV
Sbjct:   34 MSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKT--PVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNV 215
[Close]
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STAA9 (GTP-binding protein era homolog OS=Staphylococcus aureus (strain JH9) GN=era PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 79/185 (42.70%), Postives = 114/185 (61.62%), Query Frame = -3 
Query:  365 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 919
            +++K QTTR++I G+ +  + Q+I  DTPGI + K H L   MMK  ++     D I+ +V+A +   R DE + E + + K   P+ LVLNK DL+ P E+  K+E Y+ + D  E++P+SA  G  V+   D + T LP GP YYP D +S+HPE+F VGEIIREKI      E+P+A  VNV
Sbjct:   34 MSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKT--PVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNV 215
[Close]
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STAA3 (GTP-binding protein era homolog OS=Staphylococcus aureus (strain USA300) GN=era PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 79/185 (42.70%), Postives = 114/185 (61.62%), Query Frame = -3 
Query:  365 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 919
            +++K QTTR++I G+ +  + Q+I  DTPGI + K H L   MMK  ++     D I+ +V+A +   R DE + E + + K   P+ LVLNK DL+ P E+  K+E Y+ + D  E++P+SA  G  V+   D + T LP GP YYP D +S+HPE+F VGEIIREKI      E+P+A  VNV
Sbjct:   34 MSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKT--PVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNV 215
The following BLAST results are available for this feature:
BLAST of CV885510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
ERA_STAAW1.216e-3242.70GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAT1.216e-3242.70GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAS1.216e-3242.70GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAR1.216e-3242.70GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAN1.216e-3242.70GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAM1.216e-3242.70GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAE1.216e-3242.70GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAC1.216e-3242.70GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAA91.216e-3242.70GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAA31.216e-3242.70GTP-binding protein era homolog OS=Staphylococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_016B01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885510 ID=CV885510; Name=CV885510; organism=Citrus sinensis; type=EST; length=921bp
TTTTTTTTTTTTTTTTTGGGAGTTAAAAGACATTAATTGTCCAAGATCAC
ATCATAGATGATATGAATCATCTTTAACAAAACACTAACACATACAAAAT
CAATATGGGAGGATTCTATACTAGTCAACAAAATTGAGAGCTATTTCCTC
TTTTTGTCATTTTTTTCTACAATGACCGGACCACCTTGACTTACCTAGTG
GGAAATGGGTCAATTGTGATGAAACTTCACCATCATACAATTCACAATGC
TTGAATTTGGCCCCCATAACCATAGTGCTTCAAAAGTCCTTCGTCTTGCC
GCCAATTCTCTTTTACTTTTACTTGTATAAAATCTTTGGCAGTTGGCCTA
GTTTTGTAACTTACAACATTGACTTGACATGCATAAGGAACCTCATTGCG
GTATTGCATAAAGATCTTCTCTCTAATAATCTCACCTACAAAGAATCTTT
CTGGGTGCTCACTAACAATGTCCTTTGGATAATAAGCTGGGCCAAGTGGA
AGTTTGGTCAATATCCAATCCCTGATATCTTCCACTCCATGACCATATTT
TGCACTCACGGGTATGACCTCATCAACATCTGTAAATTTCTCATACCACT
CAAGCTTTTTAGCAATTTCACCAGGCTTGATCAGATCCTTCTTATTCAGT
ACCAACAAAATAGGCAATTTATCTTTGTGGTCTCCCACTCCCTCTTCCAA
AATTTCATCAATTCTTTCAGGAGCTTTACAAGCATCAACGAGAACAACAA
TACAGTCAGCGTTAATCCCAGCACTGCGGACATTCTTCATCATCATAGAG
TCCAACATGTGAATTTTCTTCTCAATTATACCAGGGGTATCATAAAGTAT
CATCTGATACTCTGGACCAGAACAGATACCAAGAATACGGTGCCTTGTAG
TTTGGGGCTTATTTGTAACAA
back to top