CV885509

Overview
NameCV885509
Unique NameCV885509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3426 contig Csv1_Contig3426:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV885509 vs. ExPASy Swiss-Prot
Match: YC22_ARATH (Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana GN=At1g02270 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 3 
Query:  378 QRIWKTTWSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARLTVVFSPIRMPCS 602
            ++IW  T  +Q  +  +   +   +   ++ IG  V  A+LFP E EKG WPENY++SDHA LTV FSP++M CS
Sbjct:  410 KKIWNMTMVNQPGNCKESVMESKKEEGEDEAIGLKVNKAILFPQEAEKGLWPENYNISDHACLTVQFSPVKMLCS 484
The following BLAST results are available for this feature:
BLAST of CV885509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YC22_ARATH1.018e-1244.00Uncharacterized calcium-binding protein At1g02270 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016B01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T3_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885509 ID=CV885509; Name=CV885509; organism=Citrus sinensis; type=EST; length=889bp
TTCAGCTTAATTTAACTGGCCACAAACATGGTCTCGCTGATGAAGAGACA
AAGGACTTGTGGGTCCAAGCTGATATTGATGGGAACGGTGTCGTTGATTA
TAAAGAATTTCAGGTAGATTCAATGAAGCTATCTTTATATAGCTCTCAAT
TATGCGTATTATCAGAACGTTCCTCAAGCACATGCAGATAAAGCTATGTG
ATCTTTGTTGATTCCCCTATCTATTTTAGATTTTCTGCAACTTAAATTTG
TGTTTCATCTCTGTACTTTGAATCTAGTGGGTTCTGAATAATGATTACTT
GCATTGATGTCAATGCTTTTAGTTTTGTCTGTGATCTCTAATTATAATGG
TAATGCTTCTACATGATGGAACTGCAGCAGCGAATTTGGAAGACCACATG
GTCAGATCAAAGAAATGACCTCAATGATGAAGATGAAGATGGTTTTGTGA
AAAGTAGTCTGGAGCAAACAATTGGTTTTAGCGTAAAGAATGCAGTTCTC
TTCCCTCCTGAAGTAGAGAAGGGAAGGTGGCCTGAAAACTATTCTCTTTC
TGATCATGCCCGTCTCACTGTGGTCTTCTCACCAATTAGAATGCCATGCT
CTCGGTTATCTTGACTAACCTCACATGCGATGCAATTTGAGTTTGAAGCC
ACATTAGCATATAGAGCAAATAGTTTAGAAGCCACATAACTGCTTCTTGG
ATTCTTCAGATGACACATCCGTACAGGAAGAACATAAGTACAGAGGAAGG
GTGCATGGTTCATGCGATGGGATGCTCAAATAGCTCATCGGATTCTTCTT
GGGAGAGCTTAAGATTCCACGAAATAGTGCTGTGCTCAATGAATCATGCA
GTATACGTGCTGCCCTACAGAACTGCTCCGATTCTCTTA
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