EY665408

Overview
NameEY665408
Unique NameEY665408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1006
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 9.980e-55
Identity = 124/195 (63.59%), Postives = 139/195 (71.28%), Query Frame = 2
Query:   29 SGLGRMDCRAKPWSPGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPYRS*TDFWESQGV---GVVQAKNFLGVEGLEVKS--PREAKM 598
            SGL R+ CRAK  SPGFKVA+LGAAGGIGQPLAMLM +NPLVSVLHLYDV N PGVTADISHMDT+AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRKPGMTRDDLFNINAGIV+TL E IAK                   P+  +VFKK G +    D  +  GV    VV+A  F+     EV S  PRE ++
Sbjct:   27 SGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAK-CCPKAIVNIISNPVNSTVPIAAEVFKKAGTF----DPKKLMGVTMLDVVRANTFVA----EVMSLDPREVEV 212          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.303e-54
Identity = 111/154 (72.08%), Postives = 120/154 (77.92%), Query Frame = 2
Query:   29 SGLGRMDCRAKPWSPGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPY 490
            S L R +CRAK  +PGFKVA+LGAAGGIGQPLAMLM +NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTL EGIAK                   P+  +VFKK G Y
Sbjct:   29 SALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAK-CCPRAIVNLISNPVNSTVPIAAEVFKKAGTY 181          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.223e-54
Identity = 112/154 (72.73%), Postives = 120/154 (77.92%), Query Frame = 2
Query:   29 SGLGRMDCRAKPWSPGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPY 490
            S L R +CRAK  +PGFKVA+LGAAGGIGQPLAMLM +NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPAGVPRKPGMTRDDLF INAGIVKTL EGIAK                   P+  +VFKK G Y
Sbjct:   29 SVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAK-CCPTAIVNLISNPVNSTVPIAAEVFKKAGTY 181          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 1.441e-53
Identity = 122/190 (64.21%), Postives = 133/190 (70.00%), Query Frame = 2
Query:   35 LGRMDCRAKPWSPGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPYRS*TDFWESQGV---GVVQAKNF----LGVEGLEVKSP 583
            L R DCRAK    GFKVA+LGAAGGIGQPLAMLM +NPLVS+LHLYDVVNTPGVT+DISHMDT AVVRGFLGQQQLEDAL GMD+VIIPAGVPRKPGMTRDDLFNINAGIVKTL E IAK                   P+  +VFK+ G Y    D     GV    VV+A  F    LGV+  +V  P
Sbjct:   28 LKRSDCRAKGGVSGFKVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAIAK-CCPKAIVNVISNPVNSTVPIAAEVFKRAGTY----DPKRLLGVTMLDVVRANTFVAEVLGVDPRDVDVP 212          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 5.476e-53
Identity = 106/159 (66.67%), Postives = 123/159 (77.36%), Query Frame = 2
Query:   14 IDAFRSGLGRMDCRAKPWSPGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPY 490
            ++A  S +GR +CRAK  +PGFKVA+LGAAGGIGQ L++LM +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAG+PRKPGMTRDDLF INAGIVKTL EG+AK                   P+  +VFKK G Y
Sbjct:   22 MEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAK-CCPNAIVNLISNPVNSTVPIAAEVFKKAGTY 179          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 7.152e-53
Identity = 107/148 (72.30%), Postives = 119/148 (80.41%), Query Frame = 2
Query:   47 DCRAKPWSPGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPY 490
            +CRAK  +PGFKVA+LGA+GGIGQPLA+LM +NPLVSVLHLYDVVNTPGVTADISHM+T AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRKPGMTRDDLFNINAGIV+TL EGIAK                   P+  +VFKK G Y
Sbjct:   35 NCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAIVNVISNPVNSTVPIAAEVFKKAGTY 181          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 3.550e-52
Identity = 106/159 (66.67%), Postives = 122/159 (76.73%), Query Frame = 2
Query:   14 IDAFRSGLGRMDCRAKPWSPGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPY 490
            ++A  S +GR +CRAK  +PGFKVA+LGAAGGIGQ L++LM +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPRKPGMTRDDLF INAGIVKTL EG+AK                    +  +VFKK G Y
Sbjct:   26 MEAKNSVMGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVKTLCEGVAK-CCPNAIVNLISNPVNSTVAIAAEVFKKAGTY 183          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 6.694e-51
Identity = 104/159 (65.41%), Postives = 120/159 (75.47%), Query Frame = 2
Query:   14 IDAFRSGLGRMDCRAKPWSPGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPY 490
            ++A  S +G   CRAK  +PGFKVA+LGAAGGIGQ L++LM +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPRKPGMTRDDLF INAGIV+TL EG+AK                    +  +VFKK G Y
Sbjct:   26 MEAKNSVMGLESCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGVAK-CCPNAIVNLISNPVNSTVAIAAEVFKKAGTY 183          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 7.677e-39
Identity = 93/175 (53.14%), Postives = 114/175 (65.14%), Query Frame = 2
Query:   71 PGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPYRS*TDFWESQGVGVVQAKNF----LGVEGLEVKSP 583
            P  KVAVLGAAGGIGQPLA+LM +NPLVS L LYD+  TPGV AD+SH++T + V+G+ G++QL +AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV++L   IAK+                  P+  +V KK G Y     F  +  + VV+AK F     GV   EV  P
Sbjct:   25 PQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAGIVRSLTAAIAKY-CPHAIINMISNPVNSTVPIASEVLKKAGVYDEKKLFGVTT-LDVVRAKTFYAGKAGVPVAEVNVP 197          
BLAST of EY665408 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 7.677e-39
Identity = 89/160 (55.62%), Postives = 108/160 (67.50%), Query Frame = 2
Query:   71 PGFKVAVLGAAGGIGQPLAMLMNINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLFEGIAKWXXXXXXXXXXXXXXXPQFPLLVKVFKKVGPYRS*TDFWESQGVGVVQAKNF 550
            P  KVAVLGAAGGIGQPLA+LM +NPLVS L LYD+  TPGV AD+ H++T + V G++G++QL  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK+L   IAK+                  P+  +VFKK G Y     F  +  + VV+AK F
Sbjct:   33 PERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKY-CPNALINMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTT-LDVVRAKTF 190          
The following BLAST results are available for this feature:
BLAST of EY665408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
MDHG2_ARATH9.980e-5563.59Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDHG_CITLA1.303e-5472.08Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_CUCSA2.223e-5472.73Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG_SOYBN1.441e-5364.21Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHG1_ARATH5.476e-5366.67Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG_ORYSJ7.152e-5372.30Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG2_BRANA3.550e-5266.67Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA6.694e-5165.41Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHM_FRAAN7.677e-3953.14Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_CITLA7.677e-3955.63Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-F01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665408 ID=EY665408; Name=EY665408; organism=Citrus sinensis; type=EST; length=1006bp
AATGGAATGATAGATAGACGCATTTAGATCGGGTTTGGGGCGGATGGATT
GCAGGGCAAAACCCTGGTCGCCCGGATTCAAGGTGGCTGTATTGGGAGCT
GCTGGAGGGATTGGACAGCCTCTGGCTATGTTGATGAACATCAATCCCTT
GGTTTCAGTTCTTCATCTTTATGATGTTGTCAATACTCCTGGGGTTACTG
CCGATATCAGTCACATGGATACAAATGCTGTGGTACGAGGATTTTTGGGG
CAACAGCAATTGGAGGATGCCCTCACGGGCATGGACATTGTAATCATTCC
CGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGTTCAATA
TCAATGCCGGAATTGTTAAGACCCTTTTTGAAGGAATAGCTAAGTGGCTG
TCCAAAAGCCTATTGTGAACTTGATTAGTAATCCTGGTAACTCCCCAGTT
CCCATTGCTGGTAAAAGTTTTCAAGAAAGTTGGGCCTTATAGATCCTAAA
CCGATTTTTGGGAATCACAAGGGGTTGGAGTTGTACAAGCCAAAAACTTT
TTGGGGGTGGAAGGCTTGGAGGTTAAGTCCCCCAGGGAAGCAAAAATGAT
AAAGATAAGGGAGGACAAAGAACGAGGGACAAAAATTAAACCAACTAAAC
ACACAGGGAAAACAACAGAAGACAGAAATGAATGGCCAGTATAAGAGAAA
TAATGCTACGACTGAATTGAGAGCAAAAACAGGAACCAATAAGAGACAAG
AAGTTCCGAGAGATGACGCTGTGGGGCGCAGACGAGGGCGACCAGAAAAA
CGGAGAAAAAGAAAAAAGGAGAAAAGGGACAGCAATACAAAGAAAACTAA
CAGAAGATATGTAAACCCTTATACACATCCGCGCGTAGACAGACGACAAG
AGACGATAATCAGAGCACATAAAATACTTACGGGATAAAAAAATTAAGAT
TGAGGAATGAACACGACGGTAAACAGAAGATATCTCACGACTACCCGGAA
ATCTAT
back to top