CV885490

Overview
NameCV885490
Unique NameCV885490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1624 contig Csv1_Contig1624:27..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.445e-41
Identity = 93/132 (70.45%), Postives = 94/132 (71.21%), Query Frame = -3
Query:  215 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 610
            MAGRGKTL               GLQFPVGRIARFLK GKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG S   A D+
Sbjct:    1 MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPSAEDD 132          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.070e-40
Identity = 91/125 (72.80%), Postives = 91/125 (72.80%), Query Frame = -3
Query:  236 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 610
            MAGRGKTL               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK G S
Sbjct:    1 MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGAS 125          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.704e-40
Identity = 93/133 (69.92%), Postives = 95/133 (71.43%), Query Frame = -3
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK L               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK G+  SK  +ED
Sbjct:    1 MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGS--SKPTEED 131          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 4.612e-40
Identity = 91/134 (67.91%), Postives = 96/134 (71.64%), Query Frame = -3
Query:  209 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADEDS 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S + AAD+DS
Sbjct:    1 MAGRGKAIGSGAAKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAGGSKAVAADDDS 134          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.023e-40
Identity = 90/133 (67.67%), Postives = 94/133 (70.68%), Query Frame = -3
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPKK G+S   AA +D
Sbjct:    1 MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSAKAAAADD 133          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.023e-40
Identity = 90/133 (67.67%), Postives = 94/133 (70.68%), Query Frame = -3
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPKK G+S   AA +D
Sbjct:    1 MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSAKAAAADD 133          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 92/133 (69.17%), Postives = 94/133 (70.68%), Query Frame = -3
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGKTL               GLQFPVGRIARFLK GKYA RVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPKK G S   +ADED
Sbjct:    1 MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGAS-KPSADED 132          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.989e-39
Identity = 89/133 (66.92%), Postives = 93/133 (69.92%), Query Frame = -3
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S   AA +D
Sbjct:    1 MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDD 133          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.989e-39
Identity = 89/133 (66.92%), Postives = 93/133 (69.92%), Query Frame = -3
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S   AA +D
Sbjct:    1 MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDD 133          
BLAST of CV885490 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.616e-38
Identity = 86/133 (64.66%), Postives = 92/133 (69.17%), Query Frame = -3
Query:  212 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 610
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +  AD+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASHADDD 133          
The following BLAST results are available for this feature:
BLAST of CV885490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A1_ARATH2.445e-4170.45Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A6_ARATH2.070e-4072.80Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A3_ARATH2.704e-4069.92Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A7_WHEAT4.612e-4067.91Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A3_ORYSJ6.023e-4067.67Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI6.023e-4067.67Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A2_ARATH1.752e-3969.17Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A2_ORYSJ2.989e-3966.92Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI2.989e-3966.92Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A8_ORYSI9.616e-3864.66Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885490 ID=CV885490; Name=CV885490; organism=Citrus sinensis; type=EST; length=669bp
TTTTTTTTTTTTTTAAAGAAAAAGCAATTCTTCTTCTATTAAGCAACTGA
GAGAAATTATACACAAACATAGCTATTTGAAATCCTAACTACAACCACAA
AAACAACAAACTAACTAAACAAACACTAAAAAGGCAAATGTCACATAGCA
CAATTAACACAAAGAGTGTTGATCATATCACTTTGACTCTTCTAGTGATG
AGAATTTAACTGTCTTCATCAGCAGCCTTGGACCCTGAAGTTCCAGTCTT
CTTGGGAAGGAGAAGGTTGTGGATGTTGGGCATCACACCACCGTTAGCAA
TGGTAACATCCCCAAGAAGCTTGCTGAGCTCCTCATCATTCCTGACAGCC
AATTGGATGTGGCGAGGGACAATTCGTGTTTTCTTGTTGTCCCTTGCAGC
ATTTCCAGCTAATTCCAAAACCTCAGCGGCGAGATATTCAAGGACGGCGG
CGAGATAAACCGGGGCTCCGGCACCGACCCGTTCAGCATATTTCCCGGCT
TTCAGGAACCTGGCAATACGACCGACGGGAAATTGAAGCCCCGCTTTGCT
GCTACGTGAGGTGGCCTTCTTCGCCGCCCCGGACCCGAGAGTCTTGCCCC
GACCCGCCATCTCAAGTGAAAAAGCTCTTAACGAAGAAAGGAAAATGGAA
AGAGCAAAAGGTTGAGCCT
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