CV885489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.490e-41 Identity = 91/132 (68.94%), Postives = 92/132 (69.70%), Query Frame = 1 Query: 61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 456 MAGRGKTL LQFPVGRIARFLK GKYAERVGAGAP GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG S A D+ Sbjct: 1 MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPSAEDD 132
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 2.108e-40 Identity = 89/125 (71.20%), Postives = 89/125 (71.20%), Query Frame = 1 Query: 61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 435 MAGRGKTL LQFPVGRIARFLKAGKYAERVGAGAP GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK G S Sbjct: 1 MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGAS 125
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 2.753e-40 Identity = 91/133 (68.42%), Postives = 93/133 (69.92%), Query Frame = 1 Query: 61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 459 MAGRGK L LQFPVGRIARFLKAGKYAERVGAGAP GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK G+ SK +ED Sbjct: 1 MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGS--SKPTEED 131
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3) HSP 1 Score: 164.466 bits (415), Expect = 4.696e-40 Identity = 89/134 (66.42%), Postives = 94/134 (70.15%), Query Frame = 1 Query: 61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADEDS 462 MAGRGK + LQFPVGRIARFLKAGKYAERVGAGAP GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S + AAD+DS Sbjct: 1 MAGRGKAIGSGAAKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAGGSKAVAADDDS 134
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.133e-40 Identity = 88/133 (66.17%), Postives = 92/133 (69.17%), Query Frame = 1 Query: 61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 459 MAGRGK + LQFPVGRIARFLKAGKYAERVGAGAP GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPKK G+S AA +D Sbjct: 1 MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSAKAAAADD 133
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.133e-40 Identity = 88/133 (66.17%), Postives = 92/133 (69.17%), Query Frame = 1 Query: 61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 459 MAGRGK + LQFPVGRIARFLKAGKYAERVGAGAP GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPKK G+S AA +D Sbjct: 1 MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSAKAAAADD 133
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.785e-39 Identity = 90/133 (67.67%), Postives = 92/133 (69.17%), Query Frame = 1 Query: 61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 459 MAGRGKTL LQFPVGRIARFLK GKYA RVGAGAP GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPKK G S +ADED Sbjct: 1 MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGAS-KPSADED 132
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.044e-39 Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 1 Query: 61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 459 MAGRGK + LQFPVGRIARFLKAGKYAERVGAGAP GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S AA +D Sbjct: 1 MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDD 133
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.044e-39 Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 1 Query: 61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 459 MAGRGK + LQFPVGRIARFLKAGKYAERVGAGAP GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S AA +D Sbjct: 1 MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDD 133
BLAST of CV885489 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 9.792e-38 Identity = 84/133 (63.16%), Postives = 90/133 (67.67%), Query Frame = 1 Query: 61 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 459 MAGRGK + LQFPVGRIARFLKAGKYAERVGAGAP GNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG TIA+GGVMPNIH LLPKK G+S + AD+D Sbjct: 1 MAGRGKAIGAGAAKKATSRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASHADDD 133 The following BLAST results are available for this feature:
BLAST of CV885489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 235
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885489 ID=CV885489; Name=CV885489; organism=Citrus sinensis; type=EST; length=674bpback to top |