CV885486

Overview
NameCV885486
Unique NameCV885486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4378 contig Csv1_Contig4378:271..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885486 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.176e-25
Identity = 51/70 (72.86%), Postives = 65/70 (92.86%), Query Frame = -2
Query:  337 AFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 546
            AFFVFMEEFR+ + K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct:   50 AFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119          
BLAST of CV885486 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.925e-23
Identity = 46/70 (65.71%), Postives = 61/70 (87.14%), Query Frame = -2
Query:  337 AFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 546
            AFFVFME+FR+ YK+ HP NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G
Sbjct:   42 AFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111          
BLAST of CV885486 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.489e-21
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = -2
Query:  331 AFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 546
            AFFVFMEEFR+++K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K +  YN+ ++   K
Sbjct:   47 AFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118          
BLAST of CV885486 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.460e-21
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = -2
Query:  349 AFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 546
            AFFVFM +FREQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE  ++ YN++
Sbjct:   51 AFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116          
BLAST of CV885486 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.132e-20
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = -2
Query:  343 AFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 546
            AFFVFM EFRE++K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K +  YN+ ++
Sbjct:   48 AFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGES 115          
The following BLAST results are available for this feature:
BLAST of CV885486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN2.176e-2572.86HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI5.925e-2365.71HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE2.489e-2163.89DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA9.460e-2169.70HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT6.132e-2066.18HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016A01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885486 ID=CV885486; Name=CV885486; organism=Citrus sinensis; type=EST; length=550bp
TTAAGCTTTAGAACCAGTACATATAGAGCAGTGAATCTCCCACCTACAGC
TATTAATTCTTCGAAAGGCAGGCATAAGAAAATGTCGAGGGAGAAGCAAC
ATGATTCTCTTACATGATGATGAAGATGATGAAAGCATCCAAAAAAATTA
ACATGGAAGCACAAAGCATTAACATATGTTGTTTGAAACATTGTCACAGC
CTAACATGACTATGCTAATTTCTTCCTTCAACTTCTATTCATCATCATCC
TCCTCGCCACTGCCTTCTTCATCATCATCCTCATCATTCACCTCTGACAT
AGACTTCTCAGACTCCTCTTCTTCCTCCGGCTTAGTTCCCTCCGCCTGTC
TCCTATTGTAGTTTTTCATATCCTTCTCATACTCAACCTTGCGCTTCTCT
GCCTTAGCAACATACGGTGCTTTATCAGCTTCAGACATTGACTTCCATTT
CTCACCACCAGCTTTACCAACAGCAGCAACTGATTTGTTCTTAGGATGAT
CCTTCTTGTATTGTTCACGGAATTCTTCCATGAAAACAAAGAAGGCGCCT
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